Pairwise Alignments

Query, 1192 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1100 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  503 bits (1296), Expect = e-146
 Identities = 355/1111 (31%), Positives = 546/1111 (49%), Gaps = 114/1111 (10%)

Query: 156  IEGKIVDSKGAPLPGASVKVKGTTKATTANTEGKFSLVADKNDVLLISFVGYKTKEVPLN 215
            I+G++VD  G  + GA++ VKG  + T  + +G FSL       L IS+VGY   EV + 
Sbjct: 28   IKGQVVDDSGESIIGATIMVKGAKEGTLTDFDGNFSLKGKVGTTLSISYVGYSPLEVKVK 87

Query: 216  GQSTLTIQLEESAAELSDFVVVGYGSTKKVNLTGAVSTVSGDVLKDRPISNIAQGLQGVI 275
                    L E A  L + VVVG    K+  +T AV+TVS + +  RP++++   LQG +
Sbjct: 88   KLEGNRFVLREDAKVLDEVVVVGMDKQKRSTITAAVATVSSEAIASRPVTDLTSALQGNV 147

Query: 276  PNLTITN------FSGQPGRTSDLNIRGYESINGGSPLIVIDGVPTTSNSSLYSLNPQDV 329
              L  +         G+ G     NIRG  SIN G P ++IDGV      SL ++NP D+
Sbjct: 148  AGLNFSTDAVADGVGGEMGAEIKFNIRGTGSINKGEPYVLIDGV----EQSLQNVNPNDI 203

Query: 330  ENITVLKDAASAAIYGGRATFGVILITTKSG-----KFNSGLNIEFSSNFSDKRLT---E 381
            E I++LKDA++AA+YG RA +GVI++TTKSG     + +    + FSS  +  ++    E
Sbjct: 204  ETISILKDASAAAVYGARAAYGVIIVTTKSGGKDKTRVSYNGTVGFSSPINMPKMMNSLE 263

Query: 382  LPNIVTDPATVMRVKNEGYKAYYGTDLYNQTFMDYANKRSAD-PSLPPYY--IDPADPTK 438
              + + +     R  N+G K      L  +      N  S + P + P     + A    
Sbjct: 264  FAHYINE-----RNDNDGKKHEISDALIEKMEGFMKNPYSTEFPGIEPNQNKTNWASSKD 318

Query: 439  YVYVGSTNWFDELFRKNTPTWDNNLSIRGGTEKVTYNVSAGYLRQEGLFEGNPDVYSRYS 498
             VY  +T+WFD  F+  +    +NLSI GG++KV+Y V  GY+ QEGL +   D  S+Y+
Sbjct: 319  AVYA-NTDWFDYYFKDASIRHSHNLSISGGSDKVSYYVGLGYIYQEGLMDKVDDNLSKYN 377

Query: 499  LRSKTEFKATSWLKLGNTTQLSRTGYKYPTLWNGPSRGDLFHAIGRIPSFEIVNNPNGSY 558
            + +K +  A  WLK      L+    K P        G +   I   P+    + P  S 
Sbjct: 378  VNTKFQINANKWLKFNFNNNLTLNILKRPMANQTIFYGTIGQTIPNAPT----HYPIESK 433

Query: 559  TANGVLLGYLKDGGRGESQKNDYLT-------------------TFEAQTNFFKNSLRVT 599
              +     YLK+    E++ +D ++                    F+ + N FK      
Sbjct: 434  YNDASEFRYLKESHYVENRISDAMSFSATITPLQGWDIVGEMKVRFDVEDNSFKRGYP-- 491

Query: 600  TNYTFQSVNGNF-LDPYIPLEYQYANPNVNIQDGQSGLGQGYNTSKYNVF-NVFGEYEKN 657
               T++  +G   +D      Y Y  P +N ++ + G     N   Y +  N+   Y   
Sbjct: 492  ---TYEKPDGELSIDKSTKQGYVY--PGMNWKNSRWGSYTRGNAFDYYLSPNILSSYIFG 546

Query: 658  FGKHNVKAMAGYSQEGYHEDSNSIFRNDLISSNTPNIGLALGNPSYTSTAGEWALRSQFF 717
            +G H  +AMAG+  E         +++ L++S+  +   A GN S       WA    + 
Sbjct: 547  WGDHTFRAMAGFQMELQENSDGYTYKDGLLTSDIFSFANANGNLSGNEDRTHWATMGMYA 606

Query: 718  RVNYAYDNKYLLEVNGRRDGSSRFPVDDRYVFLPSGSIGWRVSEENFFKGLKPAISDFKL 777
            ++N+ Y   Y LE +GR DGSSRF    R+ F PS S G+ ++  ++FKG     S  KL
Sbjct: 607  KLNWNYQEVYFLEFSGRYDGSSRFAPGHRWGFFPSFSAGYDMARTDYFKGWNLPFSQLKL 666

Query: 778  RFSYGSLGNQTVSKAGSSDPDYYPYIPLMSSSSKITNILGGNQPPA----VYAPGLVSPS 833
            R SYG LGNQ     G+   DY  ++ L+  S     + G +  P+       P ++SP 
Sbjct: 667  RVSYGRLGNQN----GAGLYDYLGFMNLVPDSPDSWLLPGVSDTPSKGVLARTPKMISPY 722

Query: 834  LTWERQYTKNWGTDIALMGNKLNISYDYYIRDVKDMLTSSRQLPAVLG---TPPPRTNAA 890
            +TWE+    N G D+ L  N+L+++ D Y R  +DM+  +  +P++ G       + N A
Sbjct: 723  ITWEKVDNANLGIDLMLFRNRLSVTADIYQRTTRDMIGPAEAIPSISGINTEDRSKINNA 782

Query: 891  DLRTRGWELSLNYNNKFNLASSDFKYNFRFVLADNYTVITKFDNPNG-----------NI 939
             LR RGWELS+N+ ++       F Y   F ++D   V+TK++NP G           N 
Sbjct: 783  TLRNRGWELSVNWQDRLKCG---FSYGIGFNISDYKAVVTKYNNPEGLLYNNHTGLARNK 839

Query: 940  GEYYVGKRIGEIWGMETEGLFQSDAEVAAH---ADQSAVDGYYGFHAGDPKYRDLNGDGK 996
            G YY G  IGEIWG + + LF+++ EV  +    D S       +  GD KY D N DGK
Sbjct: 840  G-YYEGMDIGEIWGFQADDLFRTNREVDEYLKTVDLSFFKPGDKWQRGDVKYIDSNHDGK 898

Query: 997  INIGKLTLGDHGDLKVIGNREARYTYGISGGFNWKGFDMSFFLQGVAKRDFWLGTSSYFW 1056
            ++ GK TL DHGDLKVIGN   +Y++G +    +KGF++S   QGVAKR F +  ++YF+
Sbjct: 899  VDSGKGTLADHGDLKVIGNATPKYSFGFNLNAGYKGFEVSALFQGVAKRQFPISGAAYFF 958

Query: 1057 GTYRAPWEHVYQHQLDNMWSPENPDAYFPRYAAWRTGDIAEWRDLDVVQTRYLQDASYLR 1116
            G         ++  LD+ ++ +NP+ Y PR    +    A   +     TRYL +A+Y+R
Sbjct: 959  G-----GNSYFKEHLDH-FNAQNPEGYLPRLTDDKQTLAA---NTGYNTTRYLLNAAYMR 1009

Query: 1117 LKNLTIGYRLPEKLVKRIGLKSFRFYLSGENIGEINNIKFKVLDPETL-------GGDGS 1169
            LKNLT+ Y    +LV+ IGL + R Y++ +N+  ++ +  K  DPETL       GG   
Sbjct: 1010 LKNLTVSYSFKPQLVQHIGLSNLRVYVTCDNLFTVSKLP-KQFDPETLNQVNGWVGGSND 1068

Query: 1170 ---------SSWGTGKSYPFQRSYSAGINVT 1191
                     ++ G G+ YP  R++  GI+VT
Sbjct: 1069 TAPALTSPLNANGNGRVYPMNRNFVFGIDVT 1099