Pairwise Alignments

Query, 1192 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1083 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  571 bits (1472), Expect = e-166
 Identities = 380/1088 (34%), Positives = 560/1088 (51%), Gaps = 102/1088 (9%)

Query: 156  IEGKIVDSKGAPLPGASVKVK--GTTKATTANTEGKFSLVADKNDVLLISFVGYKTKEVP 213
            + G + D+ G PL G S+KVK       T  +  G + + AD +  +  S++G+KT +  
Sbjct: 45   VSGTVKDNNGEPLLGVSIKVKDGNIVSGTVTDFNGHYQVKADPSSTIEFSYIGFKTVQFT 104

Query: 214  LNGQSTLTIQLEESAAELSDFVVVGYGSTKKVNLTGAVSTVSGDVLKDRPISNIAQGLQG 273
            +  +  + + L      L + +VVGYG+ KK+NLTG+V  +     +  P+SN  Q LQG
Sbjct: 105  VGDRKMINVTLGVDDNLLDEVIVVGYGTQKKINLTGSVGVIDSKAFEAIPVSNAVQALQG 164

Query: 274  VIPNLTI-TNFSGQPGRTSDLNIRGYESI---NGGSPLIVIDGVPTTSNSSLYSLNPQDV 329
             +P L I +N  G   +   +N+RG  +I   + GS L++IDG+       +YS+NPQD+
Sbjct: 165  QVPGLNIYSNQGGGLNQKQSINVRGVGTIGEGSTGSALVLIDGM----EGDIYSINPQDI 220

Query: 330  ENITVLKDAASAAIYGGRATFGVILITTKSGKFNSGLNIEFSSNFSDKRLTELPNIVTDP 389
            E+I+VLKDAA+++IYG RA FGVIL+TTK GK      + ++++F       +P+ + D 
Sbjct: 221  ESISVLKDAAASSIYGSRAPFGVILVTTKKGKAGKA-QVNYNNSFRVSSPINMPSSL-DS 278

Query: 390  ATVMRVKNEGYKAYYGTDLYN-------QTFMDYANKRSADPSLPPYYIDPADPTKYV-- 440
             T     N+   A  G   YN           DY   +  D ++P     P +P+ +   
Sbjct: 279  YTFSLYYNDA-AANSGWGPYNWVSEERINRIKDYMAGKITDSTIPV----PNNPSLWADG 333

Query: 441  -YVGSTN--WFDELFRKNTPTWDNNLSIRGGTEKVTYNVSAGYLRQEGLFEGNPDVYSRY 497
               G+ N  ++D  F+ N    ++N+S+ GGT+K+ Y +SA YL Q+G      +  +RY
Sbjct: 334  YSQGNDNIDYYDYFFKDNVFAHEHNISVTGGTDKIQYYLSANYLGQDGELRIGDEYSNRY 393

Query: 498  SLRSKTEFKATSWLKLGNTTQLSRTGYKYPTLWNGPSRGDLFHAIGRI--PSFEIVNNPN 555
            +  +K   + +  + +G  T+  R+ Y  PT  N       F  IGR   P+  + + PN
Sbjct: 394  TASAKINAQLSKIVSVGFNTRFIRSDYVQPTHLNE----SFFAEIGRQCWPTKPLYD-PN 448

Query: 556  GSYTANGVLLGYLKDGGRGESQKNDYLTTFEAQTNFFKN-------SLRVTTNYT---FQ 605
            G    + VL   +++GG  + +               K        S R  T Y+   + 
Sbjct: 449  GILYDDHVL--QMQNGGEKQERNTWLYQQLNITVEPIKGWRLIGDLSYRYNTQYSHWDYL 506

Query: 606  SVNGNFLDPYIPLEYQYANPNVNIQDGQSGLGQGYNTSKYNVFNVFGEYEKNFGK-HNVK 664
            +V+   +D              N  +  S + +G   S Y   N++ +Y K F K HN+K
Sbjct: 507  TVHQTGVD---------GKTKGNTWNNDSQVHEGTYASDYFNVNLYTDYAKTFAKSHNMK 557

Query: 665  AMAGYSQEGYHEDSNSIFRNDLISSNTPNIGLALGN--------PSYTSTAGEWALRSQF 716
             + G+  E  +    +  +  +I    P I  + G         P+       WA    F
Sbjct: 558  VLFGFQAEQNNYKDIAAEKLGVIYPGKPTINTSTGMDSNNQKVAPNVAGGHNRWATAGFF 617

Query: 717  FRVNYAYDNKYLLEVNGRRDGSSRFPVDDRYVFLPSGSIGWRVSEENFFKGLKPAISDFK 776
             R+NY Y  KYLLEVN R DGSSRF  D R+ F PS S+GW ++ E FF  +   ++ FK
Sbjct: 618  GRLNYDYLEKYLLEVNLRYDGSSRFRSDSRWGFFPSASVGWNIAREKFFLPVSKVVNTFK 677

Query: 777  LRFSYGSLGNQTVSKAGSSDPDYYPYIPLMSSSSKITNILGGNQPPAVYAPGLVSPSLTW 836
            +R SYGSLGNQ  S         YP    + + +  + I+ G      +AP LVS +L+W
Sbjct: 678  VRASYGSLGNQNTS-------SLYPTYSTIGTGTG-SWIIDGTLANIAWAPSLVSYNLSW 729

Query: 837  ERQYTKNWGTDIALMGNKLNISYDYYIRDVKDMLTSSRQLPAVLGTPPPRTNAADLRTRG 896
            E+  T N G D  L  N+L  S+DYYIR   DM+  S +LP VLGT  P +N  +L+T G
Sbjct: 730  EKIRTWNAGVDFGLFNNRLTGSFDYYIRKTDDMVGPSEKLPVVLGTAVPSSNNTNLKTFG 789

Query: 897  WELSLNYNNKFNLASSDFKYNFRFVLADNYTVITKFDNPNGNIGEYYVGKRIGEIWGMET 956
            WEL L + ++ N   +   Y+ RF LAD+ T IT++ NP+G I  +Y GK +GEIWG ET
Sbjct: 790  WELELMWKDRLN---NGLNYSARFTLADSRTKITRYSNPSGLIDGFYAGKYVGEIWGYET 846

Query: 957  EGLFQSDAEVAAHADQSAVDGY----YGFHAGDPKYRDLNGDGKINIGKLTLGDHGDLKV 1012
             G+ QSD E+A H  +    G       + AGD  Y+DLN DGKI+ G  TL DHGDLK 
Sbjct: 847  IGIAQSDQEMAEHIGRLINGGQSNLGQDWKAGDIMYKDLNEDGKIDAGSRTLQDHGDLKR 906

Query: 1013 IGNREARYTYGISGGFNWKGFDMSFFLQGVAKRDFWLGTSSYFWGT--YRAPWEHVYQHQ 1070
            IGN   RY  G+    +WKGFD+  F QG  KRD++ G S YFWG    + PW       
Sbjct: 907  IGNSTPRYNVGLELAADWKGFDIRMFWQGTLKRDYFQG-SYYFWGANGRQGPWFSTALKG 965

Query: 1071 LDNMW-----SP--ENPDAYFPRYAAWRTGDIAEWRDLDVVQTRYLQDASYLRLKNLTIG 1123
             D+ +     SP   N ++Y+PR        +         QT+YLQDASYLRLKNL IG
Sbjct: 966  HDDYFRNDEASPLGTNLNSYYPR-------PLFNTDKNQQSQTKYLQDASYLRLKNLQIG 1018

Query: 1124 YRLPEKLVKRIGLKSFRFYLSGENIGEINNIKFKVLDPETLGGDGSSSWGTGKSYPFQRS 1183
            Y LP  +V+++G++  R + SGEN+  I ++     DPE++ G    SWG G  YP  R+
Sbjct: 1019 YSLPHNIVQKMGMQHLRIFASGENLFTITSL-IDFFDPESIEG---GSWGHGNVYPLSRT 1074

Query: 1184 YSAGINVT 1191
            +S G+NVT
Sbjct: 1075 FSFGLNVT 1082