Pairwise Alignments

Query, 1192 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1134 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  424 bits (1090), Expect = e-122
 Identities = 346/1201 (28%), Positives = 563/1201 (46%), Gaps = 111/1201 (9%)

Query: 27   YMGIDLDKKRRFIMRIKLTALICFITCLHIYAAG-YGQS--ITLSVKNASLQLVLDKIEK 83
            Y  + ++ K+ F + +K+   +CF+   ++ A G Y Q+  +T+   + ++  V+++IEK
Sbjct: 6    YQELFIENKQLFRI-MKIIVYVCFLCVGNLLAIGSYAQTAHVTIVSNHITIGQVINEIEK 64

Query: 84   QSGYNLWVQTELLKKSNKVSLAVKNKPLDAVLKDVFKDQTLSYAIVGKTIVVKNKVEEQN 143
            Q+ Y      + +     V +  K+K ++ VL D+FKD  + +AI GK I++ N  +++ 
Sbjct: 65   QTDYLFVFNVKDINIKRNVKVNAKDKAVNEVLNDIFKDTGIRHAIEGKNIMLINSTDKEK 124

Query: 144  NIFGGPLMVFVNIEGKIVDSKGAPLPGASVKVKGTTKATTANTEGKFSLVADKNDVLLIS 203
               G     F+ + G + D  G P+ GA+++V G +  T  +  G+FS+ A  N  L I+
Sbjct: 125  ---GAQQKDFL-VTGIVKDENGEPIIGANIQVVGKSAGTITDMNGRFSISASANSTLQIT 180

Query: 204  FVGYKTKEVPLNGQSTLTIQLEESAAELSDFVVVGYGSTKKVNLTGAVSTVSGDVLKDRP 263
            ++GY+T+ V +  Q  + I L+E  A+L + VVVGYG+ KK +LTG+V+ V GD L  R 
Sbjct: 181  YIGYQTQTVNIGEQRNINIILQEDNAQLDEVVVVGYGTMKKKDLTGSVTAVKGDELAARR 240

Query: 264  ISNIAQGLQGVIPNLTITNFSGQPGRTSDLNIRGYESINGGSPLIVIDGVPTTSNSSLYS 323
             + ++  LQG +  + ++  +G PG ++ + IRG  +I   SPL++IDG+P   N    S
Sbjct: 241  TTQLSTALQGALSGVMVSRDNGAPGSSASIQIRGVTTIGDSSPLVIIDGIPGDIN----S 296

Query: 324  LNPQDVENITVLKDAASAAIYGGRATFGVILITTKSGKFNSGLNIEFSSNFSDKRLTELP 383
            +NP+DVE+++VLKDAASA+IYG RA  GVI+ITTK  K +  + + ++  +  +  T+LP
Sbjct: 297  VNPEDVESMSVLKDAASASIYGSRAAAGVIVITTKRAK-SGDVALSYNFEYGWEIPTKLP 355

Query: 384  NIVTDPATVMRVKNEGYKAYYGTDLYNQTFMDYANKRSADPSLPPYYIDPADPTKYVYVG 443
              V      M + NE     Y  +     +  Y      + S+     +  +P KY    
Sbjct: 356  TYV-GAQRYMEMVNE---TRYNDNPDGGWYQTYTEDEITNWSIN----NATNPDKY---P 404

Query: 444  STNWFDELFRKNTPTWDNNLSIRGGTEKVTYNVSAGYLRQEGLFEGNPDVYSRYSLRSKT 503
             T+W D L + + P   + LSI GG + +    S  Y + +GL+      Y R+ +R   
Sbjct: 405  MTDWGDILLKSSAPRQTHTLSIVGGGKIIRTKASFRYDKTDGLYVNKE--YDRFMVRVNN 462

Query: 504  EFKATSWLKLGNTTQLSRTGYKYPTLWNGPSRGDLFHAIGRIPSFEIVNNPNGSYTANGV 563
            +F    ++        SR+    P   N    G     I  I +    N   G       
Sbjct: 463  DFNINKYISANLDLNFSRSKALSP---NSNPMGAGGRNIPPIYAATWTNGLWGDVKDGEN 519

Query: 564  LLGYLKDGGRGESQKNDY---LTTFEAQTNFFKNSLRVTTNYTFQSVNGNFLDPYIP-LE 619
            +L  + DGG   +   +    L       N  K S  V  N  F +V        IP   
Sbjct: 520  MLAKITDGGTFTNWGTNIGGKLGIDITPVNGLKISAAVAPN--FNNVKKKTFVKQIPYTR 577

Query: 620  YQYANPNVNIQDG--QSGLGQGYNTSKYNVFNVFGEYEKNFGKHNVKAMAGYSQEGYHED 677
             +  N  V    G   + L +  N S       F  Y K  G+H+   M GY       +
Sbjct: 578  SEDPNTTVGYMGGYRTTNLTENRNDSHDITTQFFANYAKTLGRHDFSVMIGYEDYYAFWE 637

Query: 678  SNSIFRNDLISSNTPNIGLALGNPSYTSTAG---EWALRSQFFRVNYAYDNKYLLEVNGR 734
            +    R+    ++ P   L LG+  Y    G   E+A RS F R+ Y+Y ++YL++ N R
Sbjct: 638  NLDASRDQYQLTSYPY--LDLGSEDYRDNGGNAEEYAYRSLFGRMTYSYADRYLIQANLR 695

Query: 735  RDGSSRFPVDDRYVFLPSGSIGWRVSEENFFKGLK-PAISDFKLRFSYGSLGNQTVSKAG 793
            RDGSSRF  + R+   PS S+GW +SEE FFK +     S  KLR S+G LGN+ +    
Sbjct: 696  RDGSSRFASNCRWANFPSVSLGWVISEEKFFKNINMDWFSYLKLRGSWGKLGNERIGAYD 755

Query: 794  SSDPDYYPYIPLMSSSSKITNILGGNQPPAVYAPGLVSP------------SLTWERQYT 841
                  Y Y P  ++    T +   +Q       G+VS              ++WE   +
Sbjct: 756  DDGNFIYNYYPYQAAIDYSTALFQNSQ-------GIVSSVTTAAQQKYAVRDISWETTES 808

Query: 842  KNWGTDIALMGNKLNISYDYYIRDVKDMLTSSRQLPAVLGTPPPRTNAADLRTRGWELSL 901
             + G D   + N+L+ S DYY ++ KDML  + ++P  +G   P  NA ++ T G+++ +
Sbjct: 809  WDIGLDANFLDNRLHFSADYYRKNTKDMLL-ALEIPHFIGYDNPEVNAGNMHTTGYDIEV 867

Query: 902  NYNNKFNLASSDFKYNFRFVLADNYTVITKFDNPNGN--IGEY--YVGKRIGEIWGMETE 957
             + +K      DF Y+    L+D     +K  N NG   +G      G    E +G  ++
Sbjct: 868  GWRDKV----GDFTYSISANLSD---FTSKMGNLNGTQFLGNQVKMEGSEYNEWYGYVSD 920

Query: 958  GLF--QSDAEVAAHADQSAVDGYYGFHAGDPKYRDLNGDGKINIGKLTLGDHGDLKVIGN 1015
            GLF  Q D + +   + S          GD KY+D++G   +  G   +    D  ++G 
Sbjct: 921  GLFLTQEDVDKSPKLNNSV-------KVGDIKYKDISGPDGVPDG--VISPEYDRVLLGG 971

Query: 1016 REARYTYGISGGFNWKGFDMSFFLQGVAKRDFWLGTSSYFWGTYRAPWEHVYQHQLDNMW 1075
                Y +G++    +KG+D    LQGV  +   +  S+      R  W +       N W
Sbjct: 972  SLPHYMFGLTFNAAYKGWDFGLTLQGVGSQKSQI--SAAMIEGLRDNWLNFPTILDGNYW 1029

Query: 1076 SPENPD-----AYFPRYAAWRTGDIAEWRDLDVVQTRY-LQDASYLRLKNLTIGYRLPEK 1129
            SP+N D     A +PR    RT      RD +   + Y L +  Y+RLKNL++GY LP+ 
Sbjct: 1030 SPKNTDEQNATAKYPRLT--RTN-----RDANFCMSDYWLYNGRYIRLKNLSVGYTLPKA 1082

Query: 1130 LVKRIGLKSFRFYLSGENIGEINNIKFKVLDPETLGGDGSSSWGTGKSYPFQRSYSAGIN 1189
               +  + + R Y+SG ++  I+N   K  DPE           + + YP   S   G++
Sbjct: 1083 WTTKACMNTVRLYVSGSDLFTISNAP-KGWDPEV----------STEGYPITTSLIFGVS 1131

Query: 1190 V 1190
            +
Sbjct: 1132 I 1132