Pairwise Alignments

Query, 1192 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1120 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  415 bits (1067), Expect = e-120
 Identities = 338/1187 (28%), Positives = 560/1187 (47%), Gaps = 113/1187 (9%)

Query: 44   LTALICFITCLHIYAAGYGQSITLSVKNASLQLVLDKIEKQSGYNLWVQTELLKKSNKVS 103
            L AL+ FI      A      + ++  + SL+ ++ ++EKQ+GY L+V  + +    KV 
Sbjct: 7    LLALVLFINLFTYQAQAQTAVVNINKTSVSLKELIQEVEKQAGY-LFVYGKDINIEQKVK 65

Query: 104  LAVKNKPLDAVLKDVFKDQTLSYAIVGKTIVVKNKVEEQNNIFGGPLMVFVNIEGKIVDS 163
            +  +NK + A+L++V     L+Y      I +K    E+ +I  G  ++   ++G +VD 
Sbjct: 66   INARNKQVKALLENVLPQIGLTYEYADNYISLKKTQVEKKSI--GKKII---VKGTVVDK 120

Query: 164  KGAPLPGASVKVKGT-TKATTANTEGKFSLVADKNDVLLISFVGYKTKEVPLNGQSTLTI 222
             G P+ GA++  +G+ +  T  + +GKF+L    N VL +++VG+ TK +P+N Q+ + I
Sbjct: 121  SGEPIIGANIMEQGSASNGTITDIDGKFTLSLPSNSVLAVTYVGFSTKNIPVNNQNAIQI 180

Query: 223  QLEESAAELSDFVVVGYGSTKKVNLTGAVSTVSGDVLKDRPISNIAQGLQGVIPNLTITN 282
             +EE +  L + VVV YG+ KK++ T AVS++    +  +P+ NI+  L G +  +    
Sbjct: 181  VMEEDSEILEEVVVVAYGTQKKISSTAAVSSMKTKDVAQKPVINISNSLAGRMAGVIAKQ 240

Query: 283  FSGQPGRT-SDLNIRGYESINGGSPLIVIDGVPTTSNSSLYSLNPQDVENITVLKDAASA 341
             SG+PG   SDL IRG  ++   SPL+V+DGVP         ++P  +E+IT+LKDAA+ 
Sbjct: 241  GSGEPGADGSDLRIRGVATLGNQSPLVVVDGVP----RDFSRIDPNMIEDITILKDAAAV 296

Query: 342  AIYGGRATFGVILITTKSGK-------FNSGLNIEFSSNFSDKRLTELPNIVTDPATVMR 394
            A YG     GV+L+TTK GK       +N  +  +  +  +D+  +    ++ + A +  
Sbjct: 297  APYGMAGANGVVLVTTKKGKSGAPVLSYNGYIGFQNPTRITDQVNSYEYALMKNEAAM-- 354

Query: 395  VKNEGYKAYYGTDLYNQTFMDYANKRSA-DPSLPPYYIDPADPTKYVYVGSTNWFDELFR 453
              N GY  YY    Y+Q  ++   K  A DP         ADP +Y    ++N   +L +
Sbjct: 355  --NAGYPNYYA---YSQHDLEMYRKTCAGDPD--------ADPDRY---PNSNGLRDLVQ 398

Query: 454  KNTPTWDNNLSIRGGTEKVTYNVSAGYLRQEGLFEGNPDVYSRYSLRSKTEFKATSWLKL 513
             N+   ++NL + GG++K  Y VS GY  QEG++      Y R++L +     AT + K+
Sbjct: 399  NNSVITNHNLQLSGGSDKFQYYVSLGYSYQEGMWSTTD--YQRFNLLANLSVDATKYTKI 456

Query: 514  GNTTQLSRTGYKYPTLWNGPSRGDLFHAIGRIPSFEIVNNPN---GSYTANGVLLGYLKD 570
                 LS  G+     + G   GD+ +   R P    +   N   G Y    +     + 
Sbjct: 457  ----SLSLGGWHEKKNYPGADTGDIMYQAYRTPPISAIQYSNGLWGQYVGKSLFGLTYRS 512

Query: 571  GGRGE--SQKNDYLTTFEAQTNFFKN-SLRVTTNY-TFQSVNGNFLDPYIPLEYQYANPN 626
            G R E   Q N  L + E Q  F +  S++   NY  ++     +L P        +   
Sbjct: 513  GYRQEPADQLNTSL-SIEQQLPFIQGLSIKGVINYDPYRVKKKKYLTPIPVYTLDASQTP 571

Query: 627  VNIQDGQSG-----LGQGYNTSKYNVFNVFGEYEKNFGKHNVKAMAGYSQEGYHEDSNSI 681
                +G  G     L Q +  S    +     Y + FGKH V  + G  +       N  
Sbjct: 572  YQFVEGFQGPEKPNLEQSFEESVSMTYQGMINYSRTFGKHTVTGL-GVIEARERNVWNMS 630

Query: 682  FRNDLISSNTPNIGLALGNPSYTSTAG-EWALR--SQFFRVNYAYDNKYLLEVNGRRDGS 738
             +    + N   I     +P+  S  G  W  R     FR+ Y YDN+Y+ EV+GR DG 
Sbjct: 631  AKRLNYNINIDEINAGSSDPADISNGGTSWKERQVGYAFRLGYNYDNRYMAEVSGRYDGH 690

Query: 739  SRFPVDDRYVFLPSGSIGWRVSEENFFKGLKPAISDFKLRFSYGSLGNQTVSKAGSSDPD 798
              F    R+ F P+ S+GW + EE+F K ++  +   KLR SYG  GN     AGSS   
Sbjct: 691  YYFAPGKRFGFFPAFSLGWNLREESFMKDVE-WMDKLKLRLSYGESGN----LAGSS--- 742

Query: 799  YYPYIPLMSSSSKITNILGGNQPPAVYAPGLVSPSLTWERQYTKNWGTDIALMGNKLNIS 858
             Y Y+      + +    GG     ++     +P++TWE+    ++G + +++    ++ 
Sbjct: 743  -YQYMSDYGFGNAVN--FGGVPMMGMWENLQGNPNITWEKAKKFDFGVEFSVLNGMFSLE 799

Query: 859  YDYYIRDVKDMLTSSRQL-PAVLGTPPPRTNAADLRTRGWELSLNYNNKFN---LASSDF 914
             DY+     +ML +   L PA  G P  + NA  +  +G +LSLN+N +     + S+  
Sbjct: 800  ADYFYEKRSNMLMAPNALVPAEYGIPLSQVNAGSMHNQGIDLSLNFNKRIGKDWMISAKG 859

Query: 915  KYNF-RFVLADNYTVITKFDNPNGNIGEYYVGKRIGEIWGMETEGLFQSDAEVAAHADQS 973
             + F R +L + +     F+NPN        G+  G ++G    G F  D     + D S
Sbjct: 860  TFTFARNILDEVFETEATFNNPN----RRRTGRPDGTMFGYNALGYFTYD---DFNPDGS 912

Query: 974  -----AVDGYYGFHAGDPKYRDLNGDGKINIGKLTLGDHGDLKVIG--NREARYTYGISG 1026
                 A   +   + GD +Y DL+G   +  GK+   D  D  VIG  N      +G++ 
Sbjct: 913  LKAGIATQPWGQVYPGDLRYEDLSGPNGVPDGKI---DEHDQTVIGFSNWAPEIIFGLAP 969

Query: 1027 GFNWKGFDMSFFLQGVAKRDFWLGTSSY--FWGTYRAPWEHVYQHQLDNMWSPENPDAYF 1084
               WK FD++  +QG  +    LG +    F+ +  A      + Q  + W+P+N +A +
Sbjct: 970  TVQWKNFDLNALIQGATRTSISLGETLVMPFFDSGSAT-----KLQFSDHWTPDNTNAPY 1024

Query: 1085 PRYAAWRTGDIAEWRDLDVVQTRYLQDASYLRLKNLTIGYRLPEKLVKRIGLKSFRFYLS 1144
            PR  +  T  +   R      + +++DA+Y+RLK++ IGY LP   +  IG+ S R Y S
Sbjct: 1025 PRLTSEVT--VNNHRQ---PSSWWVRDATYIRLKSIEIGYTLPRSALNFIGISSARVYAS 1079

Query: 1145 GENIGEINNIKFKVLDPETLGGDGSSSWGTGKSYPFQRSYSAGINVT 1191
            G+N+        +++DPE    +       GK Y  Q  Y+ G+N+T
Sbjct: 1080 GQNLWTWTPFMKELIDPEAKSAN-------GKYYMQQAVYAFGLNIT 1119