Pairwise Alignments

Query, 1192 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1119 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  507 bits (1306), Expect = e-147
 Identities = 349/1123 (31%), Positives = 563/1123 (50%), Gaps = 125/1123 (11%)

Query: 156  IEGKIVDSKGAPLPGASVKVKGTTKATTANTEGKFSLVADKNDVLLISFVGYKTKEVPLN 215
            I+G++VD  G P+ GA+V VKG T  T  + +G FS+       L +++VGY   +V + 
Sbjct: 34   IKGQVVDEMGEPIIGATVMVKGVTGGTITDIDGNFSIQGKVGSTLSVTYVGYAPLQVKVT 93

Query: 216  GQSTLTIQLEESAAELSDFVVVGYGSTKKVNLTGAVSTVSGDVLKDRPISNIAQGLQGVI 275
             Q    + ++E A  L + VVVG  + K+  +T AV+T+  D + +RP++++   LQG I
Sbjct: 94   KQEGNRLVMKEDAKVLDEVVVVGMDTQKRNTITAAVATLKDDAIVNRPVTDVTSALQGNI 153

Query: 276  PNLTITN------FSGQPGRTSDLNIRGYESINGGSPLIVIDGVPTTSNSSLYSLNPQDV 329
              L   +        G+ G     +IRG  SINGG P +++DGV      S+ ++NP D+
Sbjct: 154  AGLNFASDAVGGGVGGEIGADIKFSIRGIGSINGGEPYVLVDGV----EQSMQNVNPADI 209

Query: 330  ENITVLKDAASAAIYGGRATFGVILITTKSGKFN-SGLNIEFSSNFSDKRLTELPNIVTD 388
             +I+VLKDA+++A+YG RA +GV+L+TTKSGK   + +    +  FS             
Sbjct: 210  ASISVLKDASASAVYGARAAYGVVLVTTKSGKKERASVTYRGTVGFSA------------ 257

Query: 389  PATVMRVKNEGYKAYYGTDLYNQTFMDYANKRSADPSLP--------PYYID----PADP 436
            P  + ++ N    A Y    Y+        ++ +D ++         PY  +     A+ 
Sbjct: 258  PINMPKMMNALEYAAYNNQQYDNGGASSGLQKISDKTIEKIKGFMQNPYSAEFPGIEANT 317

Query: 437  TK-------YVYVGSTNWFDELFRKNTPTWDNNLSIRGGTEKVTYNVSAGYLRQEGLFEG 489
            T        Y   G+T+WF+  F+  +    +NLS++GG++KV Y +  GY  QEGL + 
Sbjct: 318  TGDDWAGAYYNQYGNTDWFEYYFKDKSVRHSHNLSVQGGSDKVNYYIGMGYTYQEGLLDK 377

Query: 490  NPDVYSRYSLRSKTEFKATSWLKLGNTTQLSRTGYKYPTLWNGPSRGDLFHAIGRIPSFE 549
              D  S+Y+L +K +FK + WL+      ++    K P      ++  L++ IG     +
Sbjct: 378  VQDDLSKYNLNTKLQFKTSDWLRFNLNNNITLQMIKRPMA----NQMILYNKIGSHRPTQ 433

Query: 550  IVNNPNGSY----TANGVLLGYLKDGGRGESQKNDYLT-------------TFEAQTNFF 592
            +   P  S     + N +L  YLK+     ++ +D L+             T E +  F 
Sbjct: 434  VTELPVESEYNIPSWNEML--YLKNSNYQRNRISDALSFSATVTPLEGWDITGEMKIRFD 491

Query: 593  --KNSLRVTTNYTFQSVNGNFLDPYIPLEYQ-YANPNV---NIQDGQSGLGQGYNTSKYN 646
               N+L++  +  +++  G F       + Q +A P +   N+  G    G  +N   Y 
Sbjct: 492  VENNNLKMKDDQKYETPAGTFKPGDATNQRQGFAYPGISWKNMYFGSYTRGSMFNY--YL 549

Query: 647  VFNVFGEYEKNFGKHNVKAMAGYSQEGYHEDSNSIFRNDLISSNTPNIGLALGNPSYTST 706
              N+   Y   +G H  KAMAGY  E        ++++ ++S++  +   A GN      
Sbjct: 550  SPNLSSSYTHQWGDHFFKAMAGYQMELQEYSEEYMYKDGMLSNDIYSFDNASGNVIAGEA 609

Query: 707  AGEWALRSQFFRVNYAYDNKYLLEVNGRRDGSSRFPVDDRYVFLPSGSIGWRVSEENFFK 766
               WA    + R+N+ Y+N Y LE +GR DGSSRF    R+ F PS S G+ ++   +F+
Sbjct: 610  RSHWATMGFYTRLNWNYNNIYFLEFSGRYDGSSRFAPGHRWGFFPSFSAGYDIARTPYFQ 669

Query: 767  GLKPAISDFKLRFSYGSLGNQTVSKAGSSDPDYYPYIPLMSSSSKITNILGGNQPPA--- 823
             L   +S  K+R SYG LGNQ     G+   DY   +PL +  +    + G +   A   
Sbjct: 670  QLALPVSQLKVRVSYGRLGNQN----GAGLYDYIAQMPLDAQGTNAWLLPGISSSTASKG 725

Query: 824  --VYAPGLVSPSLTWERQYTKNWGTDIALMGNKLNISYDYYIRDVKDMLTSSRQLPAVLG 881
                 P ++SP +TWE+    N G D+ L+ N+L+I+ D+Y R  +DM+  +  +P++ G
Sbjct: 726  TIAKTPKMISPYITWEKVDNANLGFDLMLLKNRLSITADFYQRTTRDMIGPAESIPSISG 785

Query: 882  TPP---PRTNAADLRTRGWELSLNYNNKFNLASSDFKYNFRFVLADNYTVITKFDNPNGN 938
                   + N A LR RGWELS+++N+K       F Y   F + +   V+TK++NP G 
Sbjct: 786  IASDDRAKVNNATLRNRGWELSVSWNDKLKCG---FSYGVGFNVFNYKAVVTKYNNPEGI 842

Query: 939  IGE----------YYVGKRIGEIWGMETEGLFQSDAEV---AAHADQSAVDGYYGFHAGD 985
            I            YY G  IGEIWG   + LF S+ E+     + + +A      +  GD
Sbjct: 843  IYNNHTGLAANKGYYEGMDIGEIWGYRADDLFLSNREIDDYLRNVNLTAFKSNDLWRRGD 902

Query: 986  PKYRDLNGDGKINIGKLTLGDHGDLKVIGNREARYTYGISGGFNWKGFDMSFFLQGVAKR 1045
             KY D NGDG+++ GK TL DHGDL++IGN   +Y++GI+    +KGF++S  LQGVAKR
Sbjct: 903  LKYIDSNGDGRVDGGKGTLADHGDLQIIGNTTPKYSFGINLNLGYKGFEVSTLLQGVAKR 962

Query: 1046 DFWLGTSSYFWGTYRAPWEHVYQHQLDNMWSPENPDAYFPRYAAWRTGDIAEWRDLDVVQ 1105
            DF +  S+Y +G       + ++  LD  +S ENP+ Y PR   W+  D     +     
Sbjct: 963  DFPISGSNYMFGGN----NYNFKEHLD-YFSTENPNGYLPRLTGWK-DDKDFLVNTGYNT 1016

Query: 1106 TRYLQDASYLRLKNLTIGYRLPEKLVKRIGLKSFRFYLSGENIGEINNIKFKVLDPETL- 1164
            TRYL +A+Y+R+KNLT+ Y   +K +K IG+ + + Y++ +N+  +  +  K  DPETL 
Sbjct: 1017 TRYLLNAAYMRMKNLTVAYTFNKKQLKHIGISNLKVYVTCDNLFTVTKLP-KQFDPETLN 1075

Query: 1165 ------GGDGSSSW----------GTGKSYPFQRSYSAGINVT 1191
                  GGD  ++           G G  YP  R++  G++ T
Sbjct: 1076 QVNMSAGGDAQNTAPGLTSPMKQNGNGMVYPMNRNFVFGLDFT 1118