Pairwise Alignments

Query, 1192 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1150 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  645 bits (1664), Expect = 0.0
 Identities = 404/1177 (34%), Positives = 628/1177 (53%), Gaps = 79/1177 (6%)

Query: 47   LICFITCLHIYAAGYGQSITLSVKNASLQLVLDKIEKQSGYNLWVQTELLKKSNKVSLAV 106
            ++ F  C +  A G  Q IT+S+KN  L  V + IE Q+ +++      L    KVS   
Sbjct: 20   ILLFALCFYNIAYGQNQPITVSMKNQPLLKVFEIIEDQTEFSIAYNQTKLDVKQKVSANF 79

Query: 107  KNKPLDAVLKDVFKDQTLSYAIVGKTIV---VKNKVEEQNNIFGGPLMVFVNIEGKIVDS 163
              + + +VL  V K    +Y   GK I+   V  K E   N         + I G + D+
Sbjct: 80   VREAVSSVLNSVLKGTGFTYRQEGKHIIIIPVPAKAEAAPNNTTSTQQS-IKIRGTVTDA 138

Query: 164  KGAPLPGASVKVKGTTKATTANTEGKFSLVADKNDVLLISFVGYKTKEVPLNGQSTLTIQ 223
            +G PL GA+V V G+ +AT  +  G+FSL    N  L ++++GY T+EV +  ++   IQ
Sbjct: 139  QGEPLIGANVLVDGSKQATITDMNGEFSLEVPANSKLRVTYIGYVTQEVTVKNKTLFNIQ 198

Query: 224  LEESAAELSDFVVVGYGSTKKVNLTGAVSTVS-GDVLKDRPISNIAQGLQGVIPNLTITN 282
            L+E    + + VV+G+G+ KKVN+TGAV++V+  + L DRPI+N++  LQGV+P L I +
Sbjct: 199  LQEDTQTMDEVVVIGFGTQKKVNMTGAVASVNIKESLGDRPITNVSAALQGVVPGLKIES 258

Query: 283  FSGQPGRTSDLNIRGYESINGGSPLIVIDGVPTTSNSSLYSLNPQDVENITVLKDAASAA 342
             +G PG     NIRG  SINGG PL++++ VP   N     ++PQD+E++++LKDAASAA
Sbjct: 259  TTGTPGDDMTYNIRGTTSINGGEPLVLVNNVPMDINM----IDPQDIESVSILKDAASAA 314

Query: 343  IYGGRATFGVILITTKSGKFNSGLNIEFSSNFSDKRLTELPNIVTDPATVMRVKNEGYKA 402
            IYG RA FGVILITTK GK +      +++NFS  + +ELP   +   +V+  K  G+  
Sbjct: 315  IYGARAAFGVILITTKQGKKDMAPRFNYNNNFSFSKASELPQKASPLESVLAYKEMGWA- 373

Query: 403  YYGTDLYNQTFMDYANKRSADPSLPPYYIDPAD-PTKYVYVGSTNWFDELFRKNTPTWD- 460
                   N T++D  N    +  +  Y  +P++ P  Y++    N F  L R+N    D 
Sbjct: 374  -------NDTYVDGKNITQWEGYIRDYQANPSNYPNGYIFDDQGNLF--LMRENDMFADM 424

Query: 461  ---------NNLSIRGGTEKVTYNVSAGYLRQEGLFEGNPDVYSRYSLRSKTEFKATSWL 511
                     ++ S+ GG+++ +Y +S GY  ++G+   + D + R ++ S        WL
Sbjct: 425  MDNFGFMQNHSFSVSGGSQRTSYRLSLGYTGEDGILVTDKDKFDRINMSSFLSVDVNKWL 484

Query: 512  KLGNTTQLS-RTGYKYPTLWNGPSRGDLFHAIGRIPSFEIV--NNPNGSYTANGVLLGYL 568
                TTQL  R             R  ++ +   +PS+  +     +G          ++
Sbjct: 485  ----TTQLDIRYANSTQNKVEQGGRNGVWGSAMYLPSYHNILPYEQDGIEYPAETSATFV 540

Query: 569  KDGGRGESQKNDYLTTFEAQTNFFKNSLRVTTNYTFQSV---NGNFLDPYIPLEYQYANP 625
            + G     +K +  T      +  K  L++T  YT+  +   N  +++ Y  + + +   
Sbjct: 541  RYGEPRVIKKTNLRTLGRVIISPLKG-LKITGEYTYNRITEYNRMYVNKYKYIGFNFTGL 599

Query: 626  NVNIQDGQSGLGQGYNTSKYNVFNVFGEYEKNFGKHNVKAMAGYSQEGYHEDSNSIFRND 685
              N+++ +  L QG+  + YN  N F  Y+ + GKH++  M GY+QE  H++S    R D
Sbjct: 600  LNNVENSRYALTQGF--TNYNAINAFANYDFSIGKHDISIMGGYNQEESHKESQWSQRTD 657

Query: 686  LISSNTPNIGLALGNPSYTSTAGEWALRSQFFRVNYAYDNKYLLEVNGRRDGSSRFPVDD 745
            ++  N P++  + G  S T +  E+A+R  F+RVNY YD KY+ E NGR DG+SRFP D 
Sbjct: 658  VLLENLPSLSGSTGTASVTDSFDEYAIRGLFYRVNYTYDGKYMFEANGRYDGTSRFPKDS 717

Query: 746  RYVFLPSGSIGWRVSEENFFKGLKPAISDFKLRFSYGSLGNQTVSKAGSSDPDYYPYIPL 805
            R+ F PS S GWR+SEE F K  K  +S+ KLR S+GS+GNQ + K  ++ P+ YPYIP 
Sbjct: 718  RFGFFPSFSAGWRISEEAFMKNTKSFLSNLKLRASWGSIGNQIILKPDNT-PENYPYIP- 775

Query: 806  MSSSSKITN-ILGGNQPPAVYAPGLVSPSLTWERQYTKNWGTDIALMGNKLNISYDYYIR 864
             S S  +T  ++ G +   + AP +VS S +WE+ YT ++G D     N+ N ++D+Y R
Sbjct: 776  -SMSPYLTEWLVDGQKTTTLNAPAMVSSSFSWEKVYTLDFGVDFGFFDNRFNGTFDWYRR 834

Query: 865  DVKDMLTSSRQLPAVLGTPPPRTNAADLRTRGWELSLNYNNKFNLASSDFKYNFRFVLAD 924
            D K ML     LP V+G    + NAADL+T GWEL LN+ ++ N    D+ Y   F L D
Sbjct: 835  DTKGMLAPGMDLPWVVGATAAKQNAADLKTYGWELELNWRDRIN---KDWSYRIGFNLYD 891

Query: 925  NYTVITKFDNPNGNIGE--YYVGKRIGEIWGMETEGLFQSD---AEVAAHADQSAVDGYY 979
            + + ITK++N    +G+  Y  G ++GEIWG  T+  +  D   A+           G  
Sbjct: 892  SQSEITKYNNETNLLGDKIYRKGMKMGEIWGYVTDRFYTEDDFNADGTLKPGIPIPKGAG 951

Query: 980  GFHAGDPKYRDLNGDGK-INIGKLTLGDHGDLKVIGNREARYTYGISGGFNWKGFDMSFF 1038
                GD  Y++ + D + I  G+ T  + GD ++IGN   R+ YGI+ G +WKG D+S F
Sbjct: 952  KVFPGDVLYKNFDDDTETIWSGEGTADNPGDQRIIGNSTPRFHYGITAGISWKGLDLSIF 1011

Query: 1039 LQGVAKRDFWLGTSSYFWGTYRAPWEHVYQHQLDNMWSPENPDAYFPRYAA--WRTGDIA 1096
            L+GV KRD+W  T    W T    W  +++  L N W+P N +AY+PR  +         
Sbjct: 1012 LRGVGKRDYW-RTDQIAWPT--GGWGSLFKETL-NFWTPTNTNAYYPRVYSNDGVNTSYN 1067

Query: 1097 EWRDLDVVQTRYLQDASYLRLKNLTIGYRLPEKLVKRIGLKSFRFYLSGENIGEINNIKF 1156
             W+     Q++YL +ASYL+L+N+T+ Y LP+   +R+     + + SGEN+   +++  
Sbjct: 1068 HWK-----QSKYLANASYLKLQNITLSYTLPKVWSQRLYFDDVKVFFSGENLYTWDHL-- 1120

Query: 1157 KVLDPETLGGD--GSSSWGTGKSYPFQRSYSAGINVT 1191
                PE L  D     +W     YPF R +S GINVT
Sbjct: 1121 ----PEGLETDMLSKGAW----EYPFMRKFSFGINVT 1149