Pairwise Alignments

Query, 1192 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1138 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  640 bits (1650), Expect = 0.0
 Identities = 413/1184 (34%), Positives = 623/1184 (52%), Gaps = 80/1184 (6%)

Query: 36   RRFIMRIKLTALICFITCLHIYAAGYGQSITLSVKNASLQLVLDKIEKQSGYNLWVQTEL 95
            R+ ++   L +L   +T   + A    +  ++   N +L+  ++ + KQ  Y+  ++   
Sbjct: 6    RKTLLMFLLLSLSNVLTGFQLSAQEQNKKFSVKADNVTLKEAIEVVRKQGNYSFLIRNND 65

Query: 96   LKKSNKVSLAVKNKPLDAVLKDVFKDQTLSYAIVGKTIVVKNKV---EEQNNIFGGPLMV 152
            +  + KVS+ V    ++ V+  +     +SY + G  +V+ +     +EQ   F      
Sbjct: 66   IDLNKKVSVNVDKGTINDVMAQLLTGTGISYEVNGNRVVIFHAAVPEKEQGKAFV----- 120

Query: 153  FVNIEGKIVDSKGAPLPGASVKVKGTTKATTANTEGKFSLVADKNDVLLISFVGYKTKEV 212
               ++GK+ D  G  + GA+VKV  +T+ T  + +G FSL    N  L +S++GY T+EV
Sbjct: 121  ---LKGKVTDPSGEGVIGANVKVLNSTEGTITDMDGNFSLSVTPNARLSVSYIGYATQEV 177

Query: 213  PLNGQSTLTIQLEESAAELSDFVVVGYGSTKKVNLTGAVSTVSGD-VLKDRPISNIAQGL 271
             +  Q+ L I L+E +  + + VVVGYG  KK NLTGAVS+V  D VL DRP+ +++  L
Sbjct: 178  VVKNQTPLHIALKEDSRLIDEVVVVGYGVQKKANLTGAVSSVKMDEVLGDRPVVSVSDAL 237

Query: 272  QGVIPNLTITNFSGQPGRTSDLNIRGYESIN-GGSPLIVIDGVPTTSNSSLYSLNPQDVE 330
            +G +P L IT  SG+PG     NIRG  S++  G PL+++D V    N     L+P D+E
Sbjct: 238  KGAMPGLQITGNSGRPGEEMSFNIRGVNSLDKNGKPLVLVDNVEMDINM----LDPNDIE 293

Query: 331  NITVLKDAASAAIYGGRATFGVILITTKSGKFNSGLNIEFSSNFSDKRLTELPNIVTDPA 390
            ++TVLKDAAS+AIYG RA FGVILITTK G  ++ L+I +S+NFS  R   +P   T   
Sbjct: 294  SVTVLKDAASSAIYGARAAFGVILITTKKGSDSTRLSINYSNNFSFSRPANMPRKATPLQ 353

Query: 391  TVMRVKNEGYKAYYGTDLYNQTFMDYANKRSADPSLPPYYIDPADPTKYVYVGSTNWFDE 450
            TV   K+ G   Y      + T++D   + +A+PS  P      D  +Y  +  TN FD+
Sbjct: 354  TVQAYKDMGTINYQSGQNVD-TWLDLLKEYNANPSAYPDGYAMVDGLRYS-LAETNLFDD 411

Query: 451  LFRKNTPTWDNNLSIRGGTEKVTYNVSAGYLRQEGLFEGNPDVYSRYSLRSKTEFKATSW 510
            +         +NLS+ GGT+ ++Y  S G + + G+   + D Y RY++ S       SW
Sbjct: 412  MMETGFQQ-THNLSVGGGTKDISYRFSFGMVDENGVLASDKDAYKRYNVSSYIRSDVFSW 470

Query: 511  LK-------LGNTTQLSRTGYKYPTLWNGPSRGDLFHAIG--RIPSFEI-VNNPNGSYTA 560
            +          + ++L  T   Y  +W        +  IG   I   E+ +N P      
Sbjct: 471  ITPELDIKYTNSKSELPETSGGYG-IWGAAVAFPSYFPIGTMNIDGEELPINTPR----- 524

Query: 561  NGVLLGYLKDGGRGESQKNDYLTTFEAQTNFFKNSLRVTTNYTFQSVNGNFLDPYIPLEY 620
            N + L Y         QKN+     +      KN +++   YT+  ++          ++
Sbjct: 525  NLINLAYPTT-----IQKNNIRIFGKVTITPLKN-VKLVGEYTYNHLSNE--KTKFEKKF 576

Query: 621  QYANPNVNIQDGQSGLGQGYNTS---KYNVFNVFGEYEKNFGKHNVKAMAGYSQEGYHED 677
             YA+    +++  +   +  N++    YN  N +G Y   +GKH V  M G++QE     
Sbjct: 577  YYAHGGNFVKETSTANSKYENSNGITDYNALNFYGNYNNTWGKHEVTVMGGFNQESSDYR 636

Query: 678  SNSIFRNDLISSNTPNIGLALGNPSYTSTAGEWALRSQFFRVNYAYDNKYLLEVNGRRDG 737
               + R ++I+ + P+I  A G+         + +R  F+R+NY++  KYL+E NGR DG
Sbjct: 637  YAEMSRMNMINEDLPSISQATGDYFAKDKFERYTVRGLFYRINYSFAGKYLIETNGRYDG 696

Query: 738  SSRFPVDDRYVFLPSGSIGWRVSEENFFKGLKPAISDFKLRFSYGSLGNQTVSKAGSSDP 797
            SS+FP D R+ F PS S GWRVSEE F K L   +S+ KLR S+G++GNQ+++       
Sbjct: 697  SSKFPKDSRFGFFPSVSAGWRVSEEAFMKPLTSVLSNLKLRASWGNIGNQSITP------ 750

Query: 798  DYYPYIPLMSSSSKITNILGGNQPPAVYAPGLVSPSLTWERQYTKNWGTDIALMGNKLNI 857
              Y YIP M +      +  G +   +    LVS S TWE+  T + G D+ L+ N+LN+
Sbjct: 751  --YAYIPGMDAEQAYWTV-SGIKVTTLKPAALVSNSFTWEKVTTVDVGFDLGLLNNRLNL 807

Query: 858  SYDYYIRDVKDMLTSSRQLPAVLGTPPPRTNAADLRTRGWELSLNYNNKFNLASSDFKYN 917
             +D+Y RD K ML    +LPAVLG   P  N ADLR++GWE+++++N++        KYN
Sbjct: 808  VFDWYRRDTKGMLAPGAELPAVLGASAPLQNTADLRSKGWEITVDWNDQI----GKVKYN 863

Query: 918  FRFVLADNYTVITKFDNPNGNIGE-------YYVGKRIGEIWGMETEGLF---QSDAEVA 967
              F L D  T ITK++N  G  G+       Y VG  +GEIWG  T+ L+     DA+  
Sbjct: 864  LGFNLYDAKTKITKYNNETGLFGKDKNDKDTYRVGMELGEIWGYVTDRLYTVDDFDADGK 923

Query: 968  AHADQSAVDGYYGFHAGDPKYRDLNGDGKINIGKLTLGDHGDLKVIGNREARYTYGISGG 1027
              A    V+G Y  + GD  Y+DL+ +  IN G  T  D GD K+IGN   RY YGI GG
Sbjct: 924  LKAGIPKVEG-YNPNPGDILYKDLDDNDIINGGTSTTKDPGDRKIIGNSTRRYQYGIHGG 982

Query: 1028 FNWKGFDMSFFLQGVAKRDFWLGTSSYFWGTYRAPWEHVYQHQLDNMWSPENPDAYFPRY 1087
             NWKG  +SF LQGV KRD W+  +  F+  Y A W  VY  QL N W+PE  D+YFPR 
Sbjct: 983  ANWKGVSLSFLLQGVGKRDLWI-MNDLFYPHYDA-WTTVYDTQL-NYWTPERTDSYFPRL 1039

Query: 1088 AAWRTGDIAEWRDLDVVQTRYLQDASYLRLKNLTIGYRLPEKLVKRIGLKSFRFYLSGEN 1147
                 G+ A       +QTRYLQD SYL ++N+T+ Y  P K + +IG+ +   + SGEN
Sbjct: 1040 YEKAAGNTAA---NTRIQTRYLQDGSYLSIRNITLSYNFPSKWMTKIGVNNLAVFFSGEN 1096

Query: 1148 IGEINNIKFKVLDPETLGGDGSSSWGTGKSYPFQRSYSAGINVT 1191
            +   +++  K LDPE    D       G +YP+ R YS GIN++
Sbjct: 1097 LYTFDHLP-KGLDPERSVTDDLGQ--RGFTYPYMRQYSFGINLS 1137