Pairwise Alignments

Query, 1192 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1087 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  583 bits (1502), Expect = e-170
 Identities = 368/1085 (33%), Positives = 570/1085 (52%), Gaps = 73/1085 (6%)

Query: 156  IEGKIVDSKGAPLPGASVKVKGTTKATTANTEGKFSLVADKN-DVLLISFVGYKTKEVPL 214
            + G++V+  G PL G SV  +     TT + +GKF +        L  S++G++  E+ L
Sbjct: 28   LSGEVVEKSGDPLVGVSVFNREYKIGTTTDIDGKFEITLPSGVKKLTFSYIGFQPLEIDL 87

Query: 215  N-GQSTLTIQLEESAAELSDFVVVGYGSTKKVNLTGAVSTVSGDVLKDRPISNIAQGLQG 273
               ++ +T+ + E A  L + VVVGYG+ KKVNLTGAVS ++   L DRP  ++   LQG
Sbjct: 88   KPDENKITVTMTEDAQALDEVVVVGYGTQKKVNLTGAVSVITDKELSDRPSQSLTSMLQG 147

Query: 274  VIPNLTITNFSGQPGRTSDLNIRGYESINGGSPLIVIDGVPTTSNSSLYSLNPQDVENIT 333
              P L IT  SG P ++  +N+RG  S+N  +PL+++DGV     S L  +NP DV++I+
Sbjct: 148  TTPGLNITTGSGLPNKSPSINVRGTTSVNATNPLVLVDGV----ESDLSQVNPSDVKSIS 203

Query: 334  VLKDAASAAIYGGRATFGVILITTKSGKFN--SGLNIEFSSNFSDKRLTELPNIVTDPAT 391
            V+KDA++AAIYG RA FGVIL+TTK+G+ +  +G     +  +S +   E     TD   
Sbjct: 204  VIKDASAAAIYGARAAFGVILVTTKAGESDDATGKRARTTVRYSGRFGWEANTNSTD--- 260

Query: 392  VMRVKNEGYKAYYGTDLY-----NQTFMDYANK-----------RSADPSLPPYYIDPAD 435
                ++ GY A Y  +L+      +  +DY +K           R+  P  P    D  +
Sbjct: 261  ---YEDRGYWAVYTANLFARAKDGKNIIDYTDKDMAELLARVNDRTEHPDRPWIVEDVRN 317

Query: 436  PTK-YVYVGSTNWFDELFRKNTPTWDNNLSIRGGTEKVTYNVSAGYLRQEGLFEGNPDVY 494
              K +VY G+ + +   F  N P   +N+S+ GG   V Y VS  Y  ++G+ + NPD Y
Sbjct: 318  GKKQWVYYGNYDHYHMNFSDNRPKMQHNISLSGGIGDVNYFVSGAYEYRKGILKVNPDTY 377

Query: 495  SRYSLRSKTEFKATSWLKLGNTTQLSRTGYKYPTLWNGPSRGDLFHAIGRIPSFEIVNNP 554
            ++Y+LRSK EF  T W +  N T L  T YK  +  NG       ++     +     NP
Sbjct: 378  NKYNLRSKIEFPVTKWARFSNNTSLYSTSYK--SQGNGSIEDTFGYSANGAFACYPNKNP 435

Query: 555  NGSYTANGVLLGYLKDGGRGESQKNDYLTTFEAQTNFFKNSLRVTTNYTFQSVNGNFLDP 614
            +G++  +          GR            E   +F   S  + T     S+ G+F   
Sbjct: 436  DGTWIYSVPYQSTKMANGRHIMIGEGSHRNLERNMSFINTSRFIVTPIKQLSITGDFSYK 495

Query: 615  YIPLEYQYANPNVNIQ---DGQS---GLGQGYN-------TSKYNVFNVFGEYEKNFG-K 660
            +      + + ++N +   D +    G+G G N       TS Y   N +  Y +++  K
Sbjct: 496  FDQDRNYWRSNHLNFRMYPDSEMDFYGIGAGQNKLTEQVYTSNYISVNAYANYNQSWNDK 555

Query: 661  HNVKAMAGYSQEGYHEDSNSIFRNDLISSNTPNIGLALGNPSYTSTAGEWALRSQFFRVN 720
            HN+ A  G++ E +H+ + S    +L S +  ++ LA    S      E+ L   F RVN
Sbjct: 556  HNLAATFGFNYEHWHKKNLSAVGYELSSDDLDDLNLATTMFSMGGGQNEYKLAGWFGRVN 615

Query: 721  YAYDNKYLLEVNGRRDGSSRFPVDDRYVFLPSGSIGWRVSEENFFKGLKPAISDFKLRFS 780
            Y YD +Y  E++GR DG+SRF  ++R+   PSGS+GWR+SEE F +  +P++S+ K R S
Sbjct: 616  YDYDGRYFAEISGRYDGTSRFASNNRWGCFPSGSVGWRISEEKFMEWARPSLSNLKFRVS 675

Query: 781  YGSLGNQTVSKAGSSDPDYYPYIPLMSSSSKITNILGGNQPPAVYAPGL-VSPSLTWERQ 839
            YGSLGNQ VS        +Y ++ +++ S   T   G +      + G  ++ +LTWE  
Sbjct: 676  YGSLGNQNVS-------SFYTFLRMITLSDFDTFNFGSDTKAKYSSIGAPIAQNLTWETA 728

Query: 840  YTKNWGTDIALMGNKLNISYDYYIRDVKDMLTSSRQLPAVLGTPPPRTNAADLRTRGWEL 899
               N G D+A+  N+LN + D Y+R+  +MLT   +LP V G  PP+ N ADLRT+G+EL
Sbjct: 729  RQWNIGADLAMFNNRLNFTGDIYVRNTVNMLTDGIELPGVYGATPPQMNTADLRTKGYEL 788

Query: 900  SLNYNNKFNLASSDFKYNFRFVLADNYTVITKFDNPNGNIGE-YYVGKRIGEIWGMETEG 958
            S  +++   +   +  Y+    L++    IT++DNP     + YY G ++GEIWG   +G
Sbjct: 789  SATWHDNLKIFGHNLSYSVSANLSNYDARITRYDNPEKVFAKSYYPGMKLGEIWGYHVDG 848

Query: 959  LFQSDAEVAAHADQSAVD------GYYGFHAGDPKYRDLNGDGKINIGKLTLGDHGDLKV 1012
            LF SD E A ++ Q  +           + AGD K+ DL+GDGKI++G+ +  + GD+K+
Sbjct: 849  LFASDEEAAQYSSQVDLGVVAKNLPQGTWRAGDLKFADLDGDGKISVGEDSALNPGDMKI 908

Query: 1013 IGNREARYTYGISGGFNWKGFDMSFFLQGVAKRDFWL--GTSSYFWGTYRAPWE-HVYQH 1069
            IGN      YG SG  N+ GFD+  F QG     +W   G +  FWG++  P   ++ ++
Sbjct: 909  IGNELPTLQYGFSGSLNYMGFDIYAFFQGTGNH-YWYPNGYNYQFWGSFSDPVAGYIPRN 967

Query: 1070 QLDNMWSPENPDAYFPRYAAWRTGDIAEWRDLDVVQTRYLQDASYLRLKNLTIGYRLPEK 1129
             +D  WS +NP AYFPR      G  A+   L  V  RYLQ+  Y+R KNLTIGY +P K
Sbjct: 968  FIDQCWSKDNPGAYFPR----PLGQSAKNGQLSFVNDRYLQNIRYMRFKNLTIGYSIPGK 1023

Query: 1130 LVKRIGLKSFRFYLSGENIGEINNIK--FKVLDPETLGGDGSSSWGTGKSYPFQRSYSAG 1187
            ++ ++ ++  R Y + EN+   + IK   K +DPE      SS+      YP+ ++Y  G
Sbjct: 1024 ILSKVSIQQLRVYFTAENLCYWSPIKKHSKYIDPEA-AFSRSSNQLNAMYYPWAKTYMFG 1082

Query: 1188 INVTL 1192
            I++TL
Sbjct: 1083 IDITL 1087