Pairwise Alignments
Query, 937 a.a., uvrA paralog in Bacteroidetes (from data) from Pedobacter sp. GW460-11-11-14-LB5
Subject, 947 a.a., excinuclease ABC, A subunit from Pseudomonas stutzeri RCH2
Score = 773 bits (1996), Expect = 0.0
Identities = 418/949 (44%), Positives = 605/949 (63%), Gaps = 49/949 (5%)
Query: 14 IIIKGARVHNLKNIDVAIPKNKLVVVTGMSGSGKSSLAFDTLYAEGQRRYVESLSSYARQ 73
I+I+GAR HNLKNID+ +P++KL+V+TG+SGSGKSSLAFDTLYAEGQRRYVESLS+YARQ
Sbjct: 4 ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 74 FMGRMNKPDVDYIKGIAPAIAIEQKVITSNPRSTVGTSTEIYDYLKLLFSRIGKTISPVS 133
F+ M KPDVD I+G++PAI+IEQK + NPRSTVGT TEIYDYL+LL++R+G P
Sbjct: 64 FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDH 123
Query: 134 GKEVKKDSVSTVVDYVNAMPEDTTVTIFCPLYPHNNRTIKEELAI---LLQKGFLRVLIN 190
++ +VS +VD V A+PE + + P+ E LA+ L +GF+R +N
Sbjct: 124 DAPLEAQTVSQMVDQVLALPEGRKLMLLAPVIRERKG---EHLAVFDELRAQGFVRARVN 180
Query: 191 DKIEKIETVLDDADFKDAELTDDKTVQILIDRIVTNQEEETLSRLADSAQTAFFEGKGDC 250
++ +++ + + ++ +++DR + + RLA+S +TA G
Sbjct: 181 GRLYELD------ELPKLDKQKKHSIDVVVDRFKVRGDLQ--QRLAESFETALKLADGIA 232
Query: 251 YV-----EAQGTTKHFSDRFE--LDGIKFEEPTPNFFSFNNPYGACKRCEGYGNVIGIDE 303
V E + FS RF + G E P FSFNNP GAC C+G G D
Sbjct: 233 LVASMEEEDESEEMIFSARFACPICGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDA 292
Query: 304 DLVIPDKSKSVYDNAIAPWRGEKMNVW-LQNFIKAAPKFEFPIHRPYSALTETEQQLLWT 362
++ + ++ + AI W ++ NV+ Q A + F + P+ +L Q+ +
Sbjct: 293 KRLV-NGELTLAEGAIRGW--DRRNVYYFQMLGSLASHYGFSLDEPFDSLAADHQKSILR 349
Query: 363 GN-------KY-------------FAGLDAFFKELEEQTYKIQYRVMLSRYRGKTTCPDC 402
G+ +Y F G+ + +T R L++Y CPDC
Sbjct: 350 GSGRESVEFRYLNDRGDIVKRSHPFEGIIPNLERRYRETESNSVREELAKYLSTQPCPDC 409
Query: 403 KGSRLRKDASYVKIAEKSIIDVVLMPLAKALVFFNELKLNTNDTKIAKRLLAEIDNRFLY 462
+G+RLR++A +V + ++++ V MP+ A +F L L+ +IA ++L EI R +
Sbjct: 410 RGTRLRREARHVWVGDRTLPAVTAMPIGDATDYFGGLSLSGRRGEIADKILKEIRERLQF 469
Query: 463 LNNVGLGYLTLNRLSNTLSGGESQRINLATSLGSSLVGSIYVLDEPSIGLHPRDTNKLIE 522
L NVGL YLTL+R ++TLSGGE+QRI LA+ +G+ LVG +Y+LDEPSIGLH RD +L+
Sbjct: 470 LVNVGLDYLTLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLG 529
Query: 523 VLISLRNVGNTVLVVEHEEEMMRAADYIIDIGPEAGTHGGNLVFSGNYEEILKDKNSLTG 582
L LR++GNTV+VVEH+E+ +R ADY++DIGP AG HGG +V G +E++ +SLTG
Sbjct: 530 TLRHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGRIVAEGTPDEVMAHPDSLTG 589
Query: 583 RYLSGLEKIAI-PDK-RRKWKDHILIKGARENNLQNIDVKFPLGVFTAVSGVSGSGKTSL 640
+YLSG KI P++ RR K + +KGAR NNL+N+D++ P+G+ T ++GVSGSGK++L
Sbjct: 590 KYLSGRVKINYRPERTRRDPKKLLKLKGARGNNLRNVDLEIPVGLLTCITGVSGSGKSTL 649
Query: 641 VKKILYPALQKAIGNYAGEQTGAYDGIFGNYDLVSAVEMVDQNPIGRSSRSNPVTYVKAW 700
+ L+P A+ + + +D G L V+ +DQ+PIGR+ RSNP TY +
Sbjct: 650 INNTLFPITATALNGASTLEVAPHDSFDGLQHLDKVVD-IDQSPIGRTPRSNPATYTGLF 708
Query: 701 DDIRALFSGLASAKAAGLKPAAFSFNVEGGRCDVCQGEGEVKIEMQFMADIYLPCEACNG 760
IR LF+G+ A++ G P FSFNV+GGRC+ CQG+G +K+EM F+ DIY+PC+ C G
Sbjct: 709 TPIRELFAGVPEARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKG 768
Query: 761 KRFKQQVLDVTYKEKNVSEILDMTIEEAVEFFKDEQKILNKLNPLVDVGLGYVHLGQSSN 820
KR+ ++ L+V YK K+++E+LDMTIEEA EFF + KL L+DVGL Y+ LGQS+
Sbjct: 769 KRYNRETLEVKYKGKSITEVLDMTIEEAREFFDPVPAVARKLQTLMDVGLSYIKLGQSAT 828
Query: 821 TLSGGEAQRIKLASFLIKGNNANKTLFIFDEPTTGLHFHDIKKLLKALNTLIEQGNTILV 880
TLSGGEAQR+KL+ L K + KTL+I DEPTTGLHF DI++LL L+ L + GNT++V
Sbjct: 829 TLSGGEAQRVKLSRELSK-RDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVV 887
Query: 881 IEHNMDMIKCADWVIDIGPEGGDGGGQVVFEGIPEDLVQVEKSYTGKYL 929
IEHN+D+IK ADW++D+GPEGG GGQ++ G PE++ + +S+TG +L
Sbjct: 888 IEHNLDVIKTADWLVDLGPEGGSKGGQIIACGTPEEVAGMAQSHTGHFL 936
Score = 137 bits (346), Expect = 3e-36
Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 16/197 (8%)
Query: 754 PCEACNGKRFKQQVLDVTYKEKNVSEILDMTIEEAVEFF--------------KDEQKIL 799
PC C G R +++ V ++ + + M I +A ++F K ++I
Sbjct: 405 PCPDCRGTRLRREARHVWVGDRTLPAVTAMPIGDATDYFGGLSLSGRRGEIADKILKEIR 464
Query: 800 NKLNPLVDVGLGYVHLGQSSNTLSGGEAQRIKLASFLIKGNNANKTLFIFDEPTTGLHFH 859
+L LV+VGL Y+ L +S++TLSGGEAQRI+LAS + G ++I DEP+ GLH
Sbjct: 465 ERLQFLVNVGLDYLTLDRSADTLSGGEAQRIRLASQI--GAGLVGVMYILDEPSIGLHQR 522
Query: 860 DIKKLLKALNTLIEQGNTILVIEHNMDMIKCADWVIDIGPEGGDGGGQVVFEGIPEDLVQ 919
D ++LL L L + GNT++V+EH+ D I+ AD+V+DIGP G GG++V EG P++++
Sbjct: 523 DNERLLGTLRHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGRIVAEGTPDEVMA 582
Query: 920 VEKSYTGKYLASHLNLN 936
S TGKYL+ + +N
Sbjct: 583 HPDSLTGKYLSGRVKIN 599
Score = 129 bits (325), Expect = 7e-34
Identities = 72/191 (37%), Positives = 113/191 (59%), Gaps = 15/191 (7%)
Query: 399 CPDCKGSRLRKDASYVKIAEKSIIDVVLMPLAKALVFFNELKLNTNDTKIAKRLLAEIDN 458
C CKG R ++ VK KSI +V+ M + +A FF+ + +A++L +D
Sbjct: 763 CDVCKGKRYNRETLEVKYKGKSITEVLDMTIEEAREFFDPVPA------VARKLQTLMD- 815
Query: 459 RFLYLNNVGLGYLTLNRLSNTLSGGESQRINLATSLGSSLVG-SIYVLDEPSIGLHPRDT 517
VGL Y+ L + + TLSGGE+QR+ L+ L G ++Y+LDEP+ GLH D
Sbjct: 816 -------VGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADI 868
Query: 518 NKLIEVLISLRNVGNTVLVVEHEEEMMRAADYIIDIGPEAGTHGGNLVFSGNYEEILKDK 577
+L++VL LR+ GNTV+V+EH ++++ AD+++D+GPE G+ GG ++ G EE+
Sbjct: 869 QQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIACGTPEEVAGMA 928
Query: 578 NSLTGRYLSGL 588
S TG +L L
Sbjct: 929 QSHTGHFLKPL 939
Score = 61.6 bits (148), Expect = 2e-13
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 4 KEAEKDPHKNIIIKGARVHNLKNIDVAIPKNKLVVVTGMSGSGKSSLAFDTLYAEGQRRY 63
+ +DP K + +KGAR +NL+N+D+ IP L +TG+SGSGKS+L +TL+
Sbjct: 603 ERTRRDPKKLLKLKGARGNNLRNVDLEIPVGLLTCITGVSGSGKSTLINNTLFP------ 656
Query: 64 VESLSSYARQFMGRMNKPDVDYIKGIAPAIAIEQKVITSNPRSTVGTSTEIYDYLKLLFS 123
+ + + + D ++ + + I+Q I PRS T T ++ ++ LF+
Sbjct: 657 ITATALNGASTLEVAPHDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFA 716
Query: 124 RI 125
+
Sbjct: 717 GV 718
Score = 52.0 bits (123), Expect = 2e-10
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 602 DHILIKGARENNLQNIDVKFPLGVFTAVSGVSGSGKTSLVKKILYPALQK----AIGNYA 657
D ILI+GAR +NL+NID+ P ++G+SGSGK+SL LY Q+ ++ YA
Sbjct: 2 DKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
Query: 658 GE-----QTGAYDGIFGNYDLVSAVEMVDQNPIGRSSRSNPVTYVKAWDDIRALFSGLAS 712
+ + D I G +S ++Q + RS T + +D +R L++ + +
Sbjct: 62 RQFLSMMEKPDVDTIEG----LSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGT 117
Query: 713 AK 714
+
Sbjct: 118 PR 119