Pairwise Alignments

Query, 937 a.a., uvrA paralog in Bacteroidetes (from data) from Pedobacter sp. GW460-11-11-14-LB5

Subject, 946 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  784 bits (2024), Expect = 0.0
 Identities = 426/957 (44%), Positives = 615/957 (64%), Gaps = 37/957 (3%)

Query: 4   KEAEKDPHKNIIIKGARVHNLKNIDVAIPKNKLVVVTGMSGSGKSSLAFDTLYAEGQRRY 63
           K+      + I + GARVHNLK+ID  IP+N L V+TG+SGSGKSSLAFDT++AEGQRRY
Sbjct: 2   KDMNMQETEYINVYGARVHNLKDIDAEIPRNSLTVITGLSGSGKSSLAFDTIFAEGQRRY 61

Query: 64  VESLSSYARQFMGRMNKPDVDYIKGIAPAIAIEQKVITSNPRSTVGTSTEIYDYLKLLFS 123
           +E+ S+YAR F+G + +PDVD I G++P I+IEQK    NPRSTVGT+TEIYDYL+LL++
Sbjct: 62  IETFSAYARNFLGNLERPDVDKITGLSPVISIEQKTTNKNPRSTVGTTTEIYDYLRLLYA 121

Query: 124 RIGKTISPVSGKEVKKDSVSTVVDYVNAMPEDTTVTIFCPLYPHNNRTIKEELAILLQKG 183
           R G   S +SG+E+ K +   ++D +    +   + +  PL        KE    + +KG
Sbjct: 122 RAGIAYSYLSGEEMVKYTEEQILDLILKDYKGKKIYLLAPLVRSRKGHYKELFEQVRKKG 181

Query: 184 FLRVLINDKIEKIETVLDDADFKDAELTDDKTVQILIDRIVTNQEEETLSRLADSAQTAF 243
           +L V I+ ++ ++   +    +K+ +      ++++ID+++  ++++   RL  S  TA 
Sbjct: 182 YLYVRIDGELREVTHGMKLDRYKNHD------IEVVIDKLIVAEKDD--KRLKQSVATAM 233

Query: 244 FEGKGDCYV-EAQG-TTKHFSDRF--ELDGIKFEEPTPNFFSFNNPYGACKRCEGYGNVI 299
            +G G   + +AQ  + +H+S R    + G+ + EP P+ FSFN+P GAC +C+G G V 
Sbjct: 234 RQGDGLLMILDAQTESVRHYSKRLMCPVTGLSYREPAPHNFSFNSPQGACPKCKGLGVVN 293

Query: 300 GIDEDLVIPDKSKSVYDNAIAPWRGEKMNVWLQNFIKAAPKFEFPIHRPYSALTET---- 355
            ID D VIPD+  S+Y+ AIAP    K  +          K+E  +  P   L++     
Sbjct: 294 QIDVDKVIPDRELSIYEGAIAPLGKYKNAMIFWQIGALLEKYEATLKTPVKELSDDAVEE 353

Query: 356 -----------EQQLLWTGNKYFA---GLDAFFKELEEQTYKIQYRVMLSRYRGKTTCPD 401
                      +  L+ T + YF    G+  + + L+E+      +    ++   T CP+
Sbjct: 354 ILYGSDDRIKIKSSLIGTSSDYFVTYEGVVKYIQMLQEKDASATAQKWAEQFARTTVCPE 413

Query: 402 CKGSRLRKDASYVKIAEKSIIDVVLMPLAKALVFFNELK--LNTNDTKIAKRLLAEIDNR 459
           CKG+RL K+A + +I +K+I D+  M + +   +   +   L+    KIA  +L EI  R
Sbjct: 414 CKGARLNKEALHFRIHDKNINDLANMDINELYDWLMNVDQFLSDKQKKIAAEILKEIRTR 473

Query: 460 FLYLNNVGLGYLTLNRLSNTLSGGESQRINLATSLGSSLVGSIYVLDEPSIGLHPRDTNK 519
             +L +VGL YL LNR S +LSGGESQRI LAT +GS LV  +Y+LDEPSIGLH RD  +
Sbjct: 474 LKFLLDVGLDYLALNRSSVSLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNLR 533

Query: 520 LIEVLISLRNVGNTVLVVEHEEEMMRAADYIIDIGPEAGTHGGNLVFSGNYEEILKDKNS 579
           LI  L  LR++GN+V+VVEH+++MM AADY+ID+GP+AG  GG +VFSG   E+L+ + +
Sbjct: 534 LIRSLKELRDMGNSVIVVEHDKDMMLAADYVIDMGPKAGRLGGEVVFSGTPSEMLQTE-T 592

Query: 580 LTGRYLSGLEKIAIPDKRRKWKDH-ILIKGARENNLQNIDVKFPLGVFTAVSGVSGSGKT 638
           +T +YL+G  KI +P KRRK     I +KGA+ NNL+N+DV+FPLG    V+GVSGSGK+
Sbjct: 593 MTSQYLNGEMKIEVPAKRRKGNGKSIWLKGAKGNNLKNVDVEFPLGKLICVTGVSGSGKS 652

Query: 639 SLVKKILYPALQKAIGNYAGEQTGAYDGIFGNYDLVSAVEMVDQNPIGRSSRSNPVTYVK 698
           +L+ + L P L +       +    YD I G  ++   V+ VDQ+PIGR+ RSNP TY  
Sbjct: 653 TLINETLQPILSQKFYRSLQDPL-EYDSIEGLENIDKVVD-VDQSPIGRTPRSNPATYTG 710

Query: 699 AWDDIRALFSGLASAKAAGLKPAAFSFNVEGGRCDVCQGEGEVKIEMQFMADIYLPCEAC 758
            + DIR LF  L  AK  G KP  FSFNV GGRC+ C G G   IEM F+ D+Y+PCE C
Sbjct: 711 VFSDIRNLFVSLPEAKIRGYKPGRFSFNVSGGRCEACTGNGYKTIEMNFLPDVYVPCEVC 770

Query: 759 NGKRFKQQVLDVTYKEKNVSEILDMTIEEAVEFFKDEQKILNKLNPLVDVGLGYVHLGQS 818
           +GKR+ ++ L+V +K K+++++LDMTI  AVEFF++  +ILNK+  L DVGLGY+ LGQS
Sbjct: 771 HGKRYNRETLEVRFKGKSIADVLDMTINRAVEFFENVPQILNKIKVLQDVGLGYIKLGQS 830

Query: 819 SNTLSGGEAQRIKLASFLIKGNNANKTLFIFDEPTTGLHFHDIKKLLKALNTLIEQGNTI 878
           S TLSGGE+QR+KLA+ L K  +  KTL+I DEPTTGLHF DI+ L+  LN L+++GNT+
Sbjct: 831 STTLSGGESQRVKLATELSK-RDTGKTLYILDEPTTGLHFEDIRVLMGVLNKLVDKGNTV 889

Query: 879 LVIEHNMDMIKCADWVIDIGPEGGDGGGQVVFEGIPEDLVQVEKSYTGKYLASHLNL 935
           +VIEHN+D+IK AD++ID+GPEGG GGG ++  G PE++ + +K YT K+L   L L
Sbjct: 890 IVIEHNLDVIKMADYIIDMGPEGGKGGGVLLSYGTPEEVAKSQKGYTPKFLREELGL 946