Pairwise Alignments

Query, 283 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

Subject, 308 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  110 bits (274), Expect = 5e-29
 Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 10/236 (4%)

Query: 6   SNQAILAFHGLTKAFDGQLAIDDLSMTLYPGMVVGLLGQNGAGKSTLMRCALGILDVTEG 65
           S+ AI A   + K F    AI+++++ +  G + G LG NG GKST +R   G+L  T G
Sbjct: 2   SDYAIHA-ENVVKQFGHFTAIENINLKVERGSIYGFLGPNGCGKSTTIRVLTGLLQPTAG 60

Query: 66  QIEILGGTSDNISSAQKELIGYVPQQPFGYEGFTVERALALHRSFYPNWDGSLEQEWLSR 125
           QI++LG +    S   +  IGY+ Q+   Y+  TV+  L      +     +L+Q   ++
Sbjct: 61  QIKVLGLSIPKQSELLRLKIGYMTQKFSLYDDLTVQENLQFIGQIFGMNRSTLQQRTQAQ 120

Query: 126 FQLDG-----AQQVQRLSVGQRQSLALIMAMAYRPKLLILDEPVASLDPIARREFMSDLF 180
            +  G      Q+V  +S GQ+Q LAL  A  + P+LL LDE  +++DP  RREF   LF
Sbjct: 121 LKTYGLDERRKQRVSGMSGGQKQRLALAAATMHNPELLFLDEHTSAVDPENRREFWEQLF 180

Query: 181 DLALDAGSAVLFSSHITSDLERVASHVALMRKGKLVLFKEIDALRE--SVQLVSLK 234
           DL+   G+ +L ++H   + ER    +A+M  G++    E + L +   V +V +K
Sbjct: 181 DLSAQ-GTTILVTTHYMDEAER-CHRLAIMEAGEIRADDEPEKLMQQMGVNVVEIK 234