Pairwise Alignments

Query, 365 a.a., peptidoglycan-binding LysM (RefSeq) from Shewanella loihica PV-4

Subject, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  181 bits (460), Expect = 2e-50
 Identities = 124/364 (34%), Positives = 188/364 (51%), Gaps = 27/364 (7%)

Query: 5   MKRLILLGLMIFS--SSFVVADT---LTLKSGHPDSYVVKKGDTLWDISAQFLKDPWRWP 59
           + R I   L+ F+  S  V AD    L LK   P +Y V KGDTLWDISA +L  PW WP
Sbjct: 20  LTRYITYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWP 79

Query: 60  KLWGANPQIANPHLIYPGDRLTLVFIDGEPRLVVKPHIRKSPEGRVLPKGGAIPAVDLSL 119
           +LW  NP+I NPHLIYPGD+LTL + DG+P L +KP  + SP+ RVL K  A+P V   L
Sbjct: 80  RLWQVNPEIDNPHLIYPGDKLTLFWRDGQPELSLKPMRKLSPQVRVLEK-QAVPTVQEGL 138

Query: 120 IQPYLVQNRVVDGEWFDEQPMVMGGESESKHHVTDDVIYIQGELTLGDKFGVYAKGRQFE 179
           + PYL  +R++          V+G     ++    D +YI G +    K+G+Y +  Q+ 
Sbjct: 139 VLPYLQSDRLMAKTALQGSVRVIGSSEGRQYLTKQDQLYISG-VHSEKKWGIYREVAQY- 196

Query: 180 DAESGDDLGLEVILTASGRV-IESGPVSKVRLLSNMRETKAGYRVLP---IEDDSLMSAY 235
             +  D++ + + L A G + +  G  S + LL   +E  A    LP   +E+  L + +
Sbjct: 197 --QRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEILANDIALPEVDLEERQLSTTF 254

Query: 236 F-MPKAATTPGKVLASEKDVREMGKLDVVYIDRGSQDGVETGHVFSIFRDGAEVVIDGDG 294
           +  P  A +  ++L S +  +  G+  VV ID+G  DGV  G +F +++   +V      
Sbjct: 255 YPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFELYQAAVQV------ 308

Query: 295 KPVQPKDRSTYEELLASISSDNATKMPDIYRGKLMVFKVFDRVSLGLILINEKPVRVHDK 354
                +D ST+     S  S+   ++P +  G LMV + ++R SL LI  +  P+     
Sbjct: 309 --KAKQDSSTF----LSERSNTDVQLPSVKVGALMVIRPYERFSLALITNSSAPISAEVH 362

Query: 355 LLQP 358
            L P
Sbjct: 363 ALSP 366