Pairwise Alignments
Query, 1036 a.a., acriflavin resistance protein (RefSeq) from Shewanella loihica PV-4
Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056
Score = 269 bits (687), Expect = 9e-76
Identities = 230/1049 (21%), Positives = 466/1049 (44%), Gaps = 58/1049 (5%)
Query: 7 RHPTLANLLMLAFLLLGLLNMSSIKRETFPEFAPPYVMATVVYPGASPVEVEESICLRME 66
+ P A +L + + G+++ + + P+ P V + Y GAS +E I +E
Sbjct: 9 KRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQITSVLE 68
Query: 67 DAVDGLANIEEVKCDAQEGIASMRLKLEPKADLGRMLVDVQTQI-NAIQNFPAQIEPP-I 124
D + G++ I+E+ ++ G++ + + E DL + D++ + A ++ P + + P +
Sbjct: 69 DQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEEADDPQV 128
Query: 125 VKELDWAEPVVDIAIVA-DTSWPHLKSYAEDVKR-RLKIDAGVSLVSIAGFSDHQLRIEL 182
K + V I + + + L Y E V R + +GVS V ++G + + +
Sbjct: 129 FKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLYKVMYVRI 188
Query: 183 NQADMRRLGLTAAEIADKVGRQNVKMPAGNIELKDKNILLRFDERKVTPASLAEIIIASN 242
M G+ ++I+D + ++N++ P G + + +R + +++
Sbjct: 189 KPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDFEYLVVKRA 248
Query: 243 PDGSVVRLGNIATISDRFELDEEHIQFNGSNAALIKVQKNKADDALRIKAKVSEFIELEQ 302
DG+ + L ++A + E + + +G + + + L + +V E ++ Q
Sbjct: 249 SDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQ 308
Query: 303 ARAPDGVRLTMTNDLSSVLQDRLK-----MMITNGWQGIILVFLSMWLFFS-LRYSFWVS 356
P G RL + D + ++ + + IT G LV L +++F LR + +
Sbjct: 309 QFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGG-----LVILVLYIFIGQLRATLIPA 363
Query: 357 AGLPVAFLGGLYLMSLFGVSINLMSLVGLLMAIGIMMDDAIVIAESIASHIDRGMAPHEA 416
+PV+ + FG SINL++L+ L+++IG+++DDAIV+ E+I HI+RG P A
Sbjct: 364 VTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKPLLA 423
Query: 417 VVKGVQKVAPGVVSSFLTTVLIFSALLGLDGQMGAVLSAIPTVLIMVLTISLFEAFLILP 476
KG ++V V+++ L V++F + +DG +G + + +L M + S A + P
Sbjct: 424 AYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALTLTP 483
Query: 477 NHLNHSLAHAKAETKPNRIGELKAKFLTRFEAFRNNSLVTLVTFMVRWRYVSVGATIGLL 536
L L KA KP R +L + R E + +V+ +RWR+ +
Sbjct: 484 -VLGSKL--LKANVKPGRFNQLIDRLFARLE----SGYRQVVSRAIRWRWAAP------- 529
Query: 537 LVSVSLVVGGALKFVPFPDLDGDIAEARIILPPGSSLSQTQKVVETLIASAKRVG-DRYT 595
V ++ +GG+ + ++P + S+ + V+ + + A +R
Sbjct: 530 -VVIAACIGGSYGLMQ-------------LVPAQLTPSEDRGVIFSFVRGADATSYNRMA 575
Query: 596 HEVEDEHELIRDITAQ-----YNFNADA--GESGPHVATVRLDLLSAETRNTLIEEFIRD 648
++ + + + Q ++ + A G +G V + L R +E +
Sbjct: 576 ANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQ 635
Query: 649 WRIETGELAIPLSLVFKQPTMGPAGRDIEIRLQGDDLDMLKQASVSLQSYLGQFDGISGI 708
R + F G + ++ L G D LK + L+ + ++G
Sbjct: 636 VRKALAGIPDVRVFPFMPGFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGA 695
Query: 709 LDDMRPGKEEIKVSL-RPGAESFGIDGQLVAAQLRSAYFGQLADEVQVGPENIEIEVRLN 767
D E+ V++ + A GI + ++ L G+ E ++ +R +
Sbjct: 696 DIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGD 755
Query: 768 KLQAGDLQALANFPIMLSDGSQLPLSSIALLQDQRSYVRIQRINGLRSVTVMADVDNQRA 827
+ + L+ + + G + L ++ + + S +R+ N +SVT+ A+++
Sbjct: 756 ENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLE---- 811
Query: 828 NANETIAAIKREWLAQVQQSYP-QLRVDFEGSAKETAKTGSSMGKGFLIGLFGLFAILSF 886
A T+ + Q+ P + V + G +K+ + SS+ F + L + +L+
Sbjct: 812 -AGYTLGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAA 870
Query: 887 QFRSYLEPAVVMLAIPLALIGVLWGHLLLGYNLSMPSIMGFISLAGIVVNDSILLVQYIR 946
QF S++ P VVML +P+ + G G ++G +++ S +G I L G+V + IL+V++
Sbjct: 871 QFESFINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN 930
Query: 947 HHVDEGDSVHQAVVSASRERFRAVFLTSLTTAAGLLPLLLETSLQAQVVQPLVVSIVFGI 1006
D G +A++ AS R R + +T+ TT AG +PL++ T + + I FG+
Sbjct: 931 QLRDRGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGM 990
Query: 1007 FASTLLVLFIIPCAYAILADFDKVKPHTE 1035
+TL+ L +IP Y +++ + H E
Sbjct: 991 GFATLVTLLVIPAMYRLISGSTQAPGHVE 1019
Score = 67.8 bits (164), Expect = 4e-15
Identities = 118/514 (22%), Positives = 211/514 (41%), Gaps = 58/514 (11%)
Query: 527 VSVGATIGLLLVSVSLVVGGALKFVPFPDLDGDIAEARIILPPGSSLSQTQKVVETLIAS 586
VSV + L++S+ L V G + F + E I P S+S + AS
Sbjct: 6 VSVKRPVAALVLSMLLCVFGVVSFTKLA-----VREMPDIESPVVSVSTRYQG-----AS 55
Query: 587 AKRVGDRYTHEVEDEHELIRDITAQYNFNADAGESGPHVATVRLDLLSAETRNTLIEEFI 646
A + + T +ED+ I I +G TV +L NT + + I
Sbjct: 56 ATIIESQITSVLEDQLAGISGIDEI----TSVSRNGMSRITVTFEL--GYDLNTGVSD-I 108
Query: 647 RDWRIETGELAIPLSL----VFKQPTMGPAGRDIEIRLQGDDLDMLKQASVSLQSYLGQF 702
RD + + ++P VFK G A + I L ++D + + L +F
Sbjct: 109 RD-AVARAQRSLPEEADDPQVFKNNGSGQAS--VYINLSSSEMDRTQLTDYIERVLLDRF 165
Query: 703 DGISGILD-DMRPGKEEIK-VSLRP------GAESFGIDGQLVAAQLRSAYFGQLADEVQ 754
ISG+ D+ G ++ V ++P G + I L L S GQ+ ++
Sbjct: 166 SLISGVSSVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG-GQVRNDST 224
Query: 755 VGPENIEIEVRLNKLQAGDLQALANFPIML----SDGSQLPLSSIA-LLQDQRSYVRIQR 809
V ++ A Q+ +F ++ SDG+ + L +A + + +
Sbjct: 225 V----------MSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFK 274
Query: 810 INGLRSVTVMADVDNQRANANETIAAIKREWLAQVQQSYPQ---LRVDFEGSAKETAKTG 866
+G+ +V+ M V AN E + E + +VQQ P+ L +D++ +
Sbjct: 275 SDGIVNVS-MGIVPQSDANPLEVAKRVHEE-VDKVQQFLPKGTRLAIDYDSTVFIERSIS 332
Query: 867 SSMGKGFLIGLFGLFAILSF--QFRSYLEPAVVMLAIPLALIGVLWGHLLLGYNLSMPSI 924
F+ G + + F Q R+ L PAV +P++LI G+++++ ++
Sbjct: 333 EVYSTLFITGGLVILVLYIFIGQLRATLIPAVT---VPVSLISAFMAAYYFGFSINLITL 389
Query: 925 MGFISLAGIVVNDSILLVQYIRHHVDEGDSVHQAVVSASRERFRAVFLTSLTTAAGLLPL 984
M I G+VV+D+I++V+ I HH++ G+ A +RE AV T+L LP+
Sbjct: 390 MALILSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPI 449
Query: 985 LLETSLQAQVVQPLVVSIVFGIFASTLLVLFIIP 1018
+ + V + + S+L+ L + P
Sbjct: 450 SFMDGMVGLLFTEFSVLLAMAVIFSSLIALTLTP 483
Score = 47.0 bits (110), Expect = 7e-09
Identities = 67/374 (17%), Positives = 150/374 (40%), Gaps = 42/374 (11%)
Query: 139 IVADTSWPHLKSYAEDVKRRLKIDAGVSLVSIAGFSDH--QLRIELNQADMRRLGLTAAE 196
++ + + LK++AE ++ + ++ I +S+ +L + +++ LG++
Sbjct: 666 VLGGSDYSELKTWAEKLEEEAEKSPFMTGADI-DYSEKTPELVVTIDKQRAAELGISVKS 724
Query: 197 IAD--KVGRQNVKMPAGNIELKDKNILLRFDERKVTPASLAEIIIASNPDGSVVRLGNIA 254
I+D +V K+ ++ ++ LR DE A+ I G +V L +
Sbjct: 725 ISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATGELVTLDTVT 784
Query: 255 TISDRFELDEEHIQFNGSNAALIKVQKNKADDALRIKAKVSEFIELEQAR---------- 304
I + A+ I++ ++ I A + L QA
Sbjct: 785 RIDEV--------------ASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEI 830
Query: 305 APDGVRLTMTNDLSSVLQDRLKMMITNGWQGIILVFLSMWLFFSLRYSFWVSAGLPVAFL 364
P+ + ++ + + +++ + I ++ + F S V +P+
Sbjct: 831 LPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVF 890
Query: 365 GGLYLMSLFGVSINLMSLVGLLMAIGIMMDDAIVIAESIASHIDRGMAPHEAVV-KGVQK 423
GG + + G +N+ S +G++M IG++ + I+I E DRG+ +A++ ++
Sbjct: 891 GGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARR 950
Query: 424 VAPGVVSSFLTTV----LIFSALLGLDGQM--------GAVLSAIPTVLIMVLTISLFEA 471
+ P ++++F T LI S G + ++ G + + T+L++ L
Sbjct: 951 LRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLISG 1010
Query: 472 FLILPNHLNHSLAH 485
P H+ L H
Sbjct: 1011 STQAPGHVEAELNH 1024