Pairwise Alignments

Query, 314 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

Subject, 303 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  155 bits (392), Expect = 1e-42
 Identities = 107/304 (35%), Positives = 147/304 (48%), Gaps = 25/304 (8%)

Query: 20  TLVIMAAGLGSRFGGDKQLAELGPKGETMLQLSIASAIEAGFSAAVIVTRAELIPSIQAR 79
           TL ++AAG+GSR+GG KQL  LGP GET++  SI  AI AGF   V V R +     + +
Sbjct: 4   TLFLLAAGMGSRYGGLKQLDGLGPNGETIMDYSIYDAINAGFGKLVFVIRKDFEQDFREK 63

Query: 80  -LAGLPPQFALHFCVQQLTDLPVPSGESANGTILEALT--SNRTKPWGTAHALWSARKFV 136
            ++            Q + DLP            E  T  ++RTKPWGT HA+      +
Sbjct: 64  IISKYEGHIPCELVFQSIDDLP------------EGFTCPADRTKPWGTNHAVMMGADVI 111

Query: 137 SGPMAVINADDYYGDQAFALLAQGFKLRP----NRWQMVAYPLKETLSDHGGVNRGICVT 192
           S P AVIN DD+YG  +F ++ +     P    N + MV + +  TLS+ G V+RGIC T
Sbjct: 112 SEPFAVINCDDFYGRDSFQVMGKFLSALPENSKNVYSMVGFRVGNTLSESGTVSRGICST 171

Query: 193 Q-DNLLISVEEWLNI-AWQGDNLVGSHQGRQSNLALEAMASMTCWGFTPDIFDLLGEALA 250
             +NLL SV E   I    G+       G  +        SM  WGFTPD F    E   
Sbjct: 172 DANNLLTSVVERTKIQRLDGEVKYIDDNGEWTATPDTTPVSMNFWGFTPDYFAYSEEFFK 231

Query: 251 EFVTQQGNKPD--SECYLPAVVQAALTDEAQAKQVFVSQTPDTWLGVTYPQDIDWVKQKL 308
            F++   N  +  SE ++P +V   + D     +V    T   W GVTYP+D   V  K+
Sbjct: 232 TFLSDPKNMENLKSEFFIPLMVDKLINDGTATVEVL--DTTSKWFGVTYPEDRQSVVDKI 289

Query: 309 MELL 312
             L+
Sbjct: 290 QALV 293