Pairwise Alignments

Query, 610 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella loihica PV-4

Subject, 712 a.a., DNA helicase RecQ from Pseudomonas aeruginosa PA14

 Score =  553 bits (1426), Expect = e-162
 Identities = 288/592 (48%), Positives = 396/592 (66%), Gaps = 6/592 (1%)

Query: 20  LQTVFGYRTFRTGQREVIEQVCGGQDALVIMPTGGGKSLCYQLPALVLHGLTLVVSPLIS 79
           L+ VFGY  FR  Q  +IE+V  G DALV+MPTGGGKSLC+Q+PAL+  GLT+VVSPLI+
Sbjct: 9   LKDVFGYDAFRGNQARIIERVAEGGDALVLMPTGGGKSLCFQVPALLREGLTVVVSPLIA 68

Query: 80  LMKDQVDSLKQMGVAAAYLNSSQSREEALTIYRQLHNGELKLLYVSPERLLTDSFIERLH 139
           LM+DQV +L ++GV A  LNS+ + E+   I  +L  GE+KLLY++PERL+    +  L 
Sbjct: 69  LMEDQVATLDELGVPAVALNSTLNPEQQRDIAERLQRGEIKLLYLAPERLVQPRMLAFLQ 128

Query: 140 NLPLSLFAIDEAHCISQWGHDFRPEYAALGQLKQLFPRVPMMALTATADKATREDICQRL 199
            LP+ LFAIDEAHC+SQWGHDFRPEY  LGQL +LFP+VP +ALTATAD  TRE++ QRL
Sbjct: 129 RLPVGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPQVPRIALTATADMRTREEMIQRL 188

Query: 200 GIAPFE-LLTSFDRPNIRYTVAEKLNAANQLRQFIQAQNGNSGIIYCSSRRRVDEVAERL 258
            +   E  L+SFDRPNI Y +  K     QL  F+  + G++GI+YC SR++V+EVAE L
Sbjct: 189 HLQNAEQFLSSFDRPNIFYRIVPKEQPRKQLLGFLSERRGDAGIVYCLSRKKVEEVAEFL 248

Query: 259 RMQGYHADAYHAGKTQEERADIQERFLKDQLDIVVATVAFGMGINKSNVRFVVHYDIPKS 318
             QG+ A  YHAG + E RA  Q+RFL ++  I+VAT+AFGMGI+K NVRFV H D+PKS
Sbjct: 249 GNQGFPALPYHAGLSNELRAHHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKS 308

Query: 319 VEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQQEPGPQ-QQVEYHKLNTMAAFA 377
           +EAYYQETGRAGRDGL A+A+M +   D+  +R +++  E   + ++VE HKL  M A  
Sbjct: 309 LEAYYQETGRAGRDGLPADAWMAYGLQDVLLLRQMMQSSEGDERHKRVERHKLEAMLALC 368

Query: 378 EAQTCRRQVLLHYFDESASEPCGNCDICLDPPKRYDGVEDAQKVLSCIFRLQQKFGVNHL 437
           E   CRRQ LL YFDE   +PCG+CD C+D  + +D  E A++ LS I+R  Q++GV HL
Sbjct: 369 EETRCRRQALLAYFDEEMPQPCGHCDNCVDGVETWDATESARQALSAIYRSGQRYGVGHL 428

Query: 438 IEVLRGSKAASVVDRGHDKLSTWGIGKEKSHEFWLSIIRQIIHLGFASQDITRGSAIKLN 497
           +++L G +   +   GH  L+ +GIGK +  + W ++ RQ++  G A  D+     ++L 
Sbjct: 429 VDILLGRETEKIRSLGHQHLAVFGIGKGRGEDEWRTLFRQLVARGLADVDLDGFGGLRLT 488

Query: 498 PQARAVLKGELPLQLAE----PRISITTHVKRRSSSRAPINYDRKLFARLKQLRRSLAEE 553
              R +L+GE+ L+L       R   ++     ++S+   + +R+++  L+ LRR LAEE
Sbjct: 489 EACRPLLRGEVRLELRRDLKPQRAKGSSSGGASAASQLVRSEEREMWEALRALRRKLAEE 548

Query: 554 LDVPPYLVFNDATLAEMAAMLPTSPGEMLAVNGVGETKLNRFGGEFLDEIND 605
             VPPY++F DATL EM    P S  +M  V+GVG  KL R+G  FLD + D
Sbjct: 549 HSVPPYVIFPDATLLEMLRSQPRSLSDMAQVSGVGARKLERYGQAFLDVLTD 600