Pairwise Alignments

Query, 422 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  383 bits (983), Expect = e-111
 Identities = 190/408 (46%), Positives = 281/408 (68%), Gaps = 2/408 (0%)

Query: 15  KAAKAQPKVVTFEWKGTNRDGKKTSGELRGTSPAEIKAQLKSQGVNPKVVKKKAEPLF-K 73
           KA +  P +  + WKG N +GKK SG++   S  E++ +LK Q +  K +KK +  L  +
Sbjct: 2   KATQTLP-LKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLAR 60

Query: 74  SDPKIKAMDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPL 133
              ++K+ DI ++TRQ+ATML  GVPIV  L+++G  H K  M+ +L  I   V++G PL
Sbjct: 61  LTHRVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPL 120

Query: 134 SDSLKPHRQYFDDLYVDLVGAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVI 193
           S +++    +FD LYVDLV  GE SG+L  VF+R+ATYREK+E L++K+ KA+ YP+ V+
Sbjct: 121 SKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVV 180

Query: 194 VVAIAVTTLLLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSSWYFFVIGIVVSIWS 253
           +VA+ V+ L+L  V+P+FE +F GFGAELP FTQ ++ +S W+Q+   +  I I  +I+ 
Sbjct: 181 LVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG 240

Query: 254 FKKAHLKSAGFRNKVDELVLKIPIIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAG 313
            K     S   R K   L LK PIIG +L KA++A+F+RTLAT+FAAG+P++  L++ A 
Sbjct: 241 LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAK 300

Query: 314 ASGNYVYRSALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKIAN 373
            SGN  + +A+ +V  +  +GM M +AMR T  FP+M++QMVMIGEESG LDDMLNK+A 
Sbjct: 301 TSGNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVAT 360

Query: 374 IYEMQVDDAVDGLSSLIEPMMMVVIGTLVGGLIIGMYLPIFQMGNVVG 421
           IYE +VD+ VD L  ++EP+++V +GT+VGGL++ MYLPIF + +V+G
Sbjct: 361 IYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408