Pairwise Alignments

Query, 422 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

Subject, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  208 bits (529), Expect = 3e-58
 Identities = 114/408 (27%), Positives = 229/408 (56%), Gaps = 9/408 (2%)

Query: 23  VVTFEWKGTNRDGKKTSGELRGTSPAEIKAQLKSQGVNPKVVKKKAEPLFKSD------- 75
           + TF ++G N DG K SG +   +       L ++G+ P  + + A      D       
Sbjct: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60

Query: 76  -PKIKAMDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLS 134
            P +    + +  RQ+ ++  AGVP++ ++  L +     +++  L ++  ++ +G  LS
Sbjct: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120

Query: 135 DSLKPHRQYFDDLYVDLVGAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVIV 194
            S++ H   F  L+V ++  GE++G LD    ++A Y E+    + +IK AM YP  VI 
Sbjct: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180

Query: 195 VAIAVTTLLLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSSWYFFVIGIVVSIWSF 254
             +    +L + V+PQF  +F+ FG +LP  T+++++ S +  + W   ++GI+V +   
Sbjct: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGL-LLGIIVGLLFA 239

Query: 255 KKAHLKSAGFRNKVDELVLKIPIIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGA 314
            +A + +   R + D L L++PI+G+I+++A ++RFART +   +AGVPL   L  +A A
Sbjct: 240 FRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEA 299

Query: 315 SGNYVYRSALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKIANI 374
             N      + ++++++ SG+ ++       +F  ++IQM+ +GEE+G +D++L ++++ 
Sbjct: 300 IDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDF 359

Query: 375 YEMQVDDAVDGLSSLIEPMMMVVIGTLVGGLIIGMYLPIFQMGNVVGG 422
           Y+ +VD  +  L++ IEP+++V +  +V  L +G++LP++ M + + G
Sbjct: 360 YDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407