Pairwise Alignments

Query, 888 a.a., pyruvate dehydrogenase subunit E1 (RefSeq) from Shewanella loihica PV-4

Subject, 680 a.a., transketolase from Vibrio cholerae E7946 ATCC 55056

 Score = 43.5 bits (101), Expect = 4e-08
 Identities = 61/220 (27%), Positives = 83/220 (37%), Gaps = 27/220 (12%)

Query: 105 GHISSFASSATIYDVCF----NHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEG-RLTE 159
           GH  +    A I +V +    NH  + PN  D    V   GH +  IY+   L G  L+ 
Sbjct: 40  GHPGAPMGMADIAEVLWRSHLNHNPQNPNWADRDRFVLSNGHGSMLIYSLLHLSGYELSI 99

Query: 160 DQLANFRQEVDGKGLSSYPHPKLM--PDYWQFPTVSMGLGPI-----QAIYQARFLKYLT 212
           D L NFRQ           H K    P+Y   P +    GP+      A+  A   K L 
Sbjct: 100 DDLKNFRQL----------HSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMAIAEKALA 149

Query: 213 DRGLK---DCSEQTVYCFLGDGECDEPETLGAIGLAAREELDNLVFIVNCNLQRLDGPVR 269
            +  K   D  +   Y F+GDG   E  +  A  LA    L  L+   + N   +DG V 
Sbjct: 150 AQFNKPGHDIVDHFTYVFMGDGCLMEGISHEACSLAGTLGLGKLIAFWDDNGISIDGHV- 208

Query: 270 GNGKIIQELEGEFRGAGWEVAKVIWGRYWDPLLARDTSGK 309
             G    +    F   GW V   + G   D + A   + K
Sbjct: 209 -EGWFSDDTPKRFEAYGWHVIPAVDGHDADAINAAIEAAK 247



 Score = 39.3 bits (90), Expect = 8e-07
 Identities = 108/479 (22%), Positives = 176/479 (36%), Gaps = 65/479 (13%)

Query: 363 GHDPVKIYAALQHAKNTKGRPTVILAKTVKGYGLGDAGEGKNIAHN--VKKMDISAVRYF 420
           GHD   I AA++ AK    RPT+I  KT+ G+G  +   G +  H   +   +I A R F
Sbjct: 233 GHDADAINAAIEAAKAETSRPTLICTKTIIGFGSPNKA-GSHDCHGAPLGNDEIKAAREF 291

Query: 421 RDRFNIP--IPDDKLEEIPFYHPGPDSEEVKYLQERRAALHGSMPARRQKFSEDLEVPSL 478
                 P  IP D          G   E      E+ AA   + PA   ++   +     
Sbjct: 292 LGWEYAPFEIPTDIYAAWDAKQAGASKEAA--WDEKFAAYAKAYPAEAAEYKRRVA---- 345

Query: 479 KIFDSILKGSNGREISSTMAFVRILTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGI 538
                 L  +     S  +A ++   A +  +K  +N +         FG + L   +G 
Sbjct: 346 ----GELPANWEAATSEIIANLQANPANIASRKASQNAL-------EAFG-KLLPEFMGG 393

Query: 539 YAHEGQKYVPQDSDQVAYYREDKSGQVLQEGINELGAMSSWVSAATSYSVNDTPMIPFYI 598
            A      +   S   +   ED SG  +  G+ E G M++ ++    +       +P+  
Sbjct: 394 SADLAPSNLTMWSGSKSLTAEDASGNYIHYGVREFG-MTAIINGIALHG----GFVPYGA 448

Query: 599 YYSMFGFQRIGDMAWAAGDMRARGFMVGGTSGRTTLNGEGLQHQDGHSHVLANTIPNCIS 658
            + MF       M  AA  M+ +   V  T     L  +G  HQ           PN  +
Sbjct: 449 TFLMFMEYARNAMRMAA-LMKVQNIQV-YTHDSIGLGEDGPTHQPVEQIASLRMTPNMST 506

Query: 659 YDPTYGYEIAVIVQDGIRRMYGENQEDIFYYLTTMNENYVQPEMPEGAEE--GIVKGIYK 716
           + P    E AV  +  I R      +D    L    +N  Q   P  AE+   I KG Y 
Sbjct: 507 WRPCDQVESAVAWKLAIER------KDAPSALIFSRQNLAQ--QPRSAEQVANIAKGGYI 558

Query: 717 LESVSGSGKGKVQLMGCGTILEQVRKAAQALAKDFGISSDVFSVTSFNELTRDGQAAERY 776
           L+    +G+ ++ L+  G+ +E                    +V ++ +L+ +G+A    
Sbjct: 559 LKDC--AGQPELILIATGSEVE-------------------LAVAAYEQLSAEGKAVRVV 597

Query: 777 NMLHPTETPKQ--AYISQVLSSDSPAVVATDYMKIYGEQLRAYVPTDYKVLGTDGFGRS 833
           +M       KQ  AY   VL +     +A +      +    YV    +++G   FG S
Sbjct: 598 SMPSTDAFDKQDAAYREAVLPAAVTKRIAIE--AGIADFWYKYVGFGGRIIGMTSFGES 654