Pairwise Alignments

Query, 493 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

 Score = 93.2 bits (230), Expect = 2e-23
 Identities = 79/316 (25%), Positives = 152/316 (48%), Gaps = 22/316 (6%)

Query: 188 LFTLILFALLLRYLTRPLNRLTQALGELEHKPIDQPLALP-------LAPSRSQEMAQLN 240
           L  LI+  L+ R + +PL +L Q    + +   DQ + +        LA + ++   Q+N
Sbjct: 327 LIALIVSYLINRGIIKPLEQLKQGAEWVSNGRYDQKVIVDSDDEFGELAKAFNKMATQIN 386

Query: 241 ---GQINRLLEEVAQKQRQVTAQQAAKQEFLLHLSHDLKTPLTTLLGYLDTWLLSPADAR 297
               ++ +  EE+     ++      K E +  +SH+L+TPLT++ GY++  L     A 
Sbjct: 387 ISDDKLKKHAEELKISYNELKELDKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAI 446

Query: 298 DDS---LLQYAAASGQKLQQLLAQMLELAALENGQIKANMRRVSLQSILDELNQTFTPKA 354
           +DS    LQ A  +  +L++L+  ML+L+ +E G+++    +V+L+SI+ ++ +   P A
Sbjct: 447 NDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLA 506

Query: 355 KRAEVSLRLGQGESEGESEFLYTDPQLMSRVLNNLLDNALRHTPPGGEIAVYPQTLASGS 414
               + L       E E   +  D   +++VL NL++NA++ +P    I V         
Sbjct: 507 TEKNIKL-----NKEVEDIAIEADKDRITQVLTNLIENAIKFSPANESILVSGVLEDEHI 561

Query: 415 YLVIQDSGSGMQPEAIAALQHTPSPSQPELYYCRGETLPQLGVGLAIVRQLLARLGCRIE 474
           +L + D G+G+  + +  + +            +G +    G+GLA+ + ++      I 
Sbjct: 562 HLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGS----GLGLAVCKSIVEAHKGSIW 617

Query: 475 VQSATDRGSRFMIALP 490
           V+S   +GS F I LP
Sbjct: 618 VESELGKGSTFHIILP 633