Pairwise Alignments

Query, 857 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

Subject, 748 a.a., PAS-family GGDEF/EAL family protein from Caulobacter crescentus NA1000

 Score =  230 bits (586), Expect = 3e-64
 Identities = 173/564 (30%), Positives = 285/564 (50%), Gaps = 39/564 (6%)

Query: 298 LARIFQQKERSKITLEAIAEAVILTDSWAKVIYLNPQAERLLKVKAESAVGMNLDKVF-R 356
           LA    + ER++  +  I EA+    +   V   +  +  LL    E  +G   D+V  +
Sbjct: 140 LALAKAEVERAQTFMTGIVEAM---PAMVFVKRADDHSYVLLNRAGEKTLGFKRDEVIGK 196

Query: 357 SEPELNQSLFAFMASGTPTPMLS----KVKFTSHTPR-------LMERSIS--NLKGPNN 403
           ++ +++ +  A +       +L     +V    H PR       L  + I+  N +G   
Sbjct: 197 TDADIHDAELAALYRERDRAVLDSGEVRVIEEDHVPRKDGGMAILRTKKIALLNAEGRAE 256

Query: 404 KIIGTVIVLRDITQEELLKHQLRRRANFDNVTGLLNRCAFEERL-QAFAEDAQ---TLAI 459
            ++G   V  DI + +  + Q+ R A++D +T L NR  F++ L +A A  ++    LA+
Sbjct: 257 YLLG---VSEDIAERKRAEAQIARLAHYDPLTDLPNRVLFQKSLGEALARRSRKGDALAV 313

Query: 460 CYFDLEQFKLINDSCGHNAGDAMLKMVAKAIQASLEGQGLLARLGGDEFGLALKDL---- 515
            + DL++FK +ND+ GH  GDA+LK+ A+ ++  +     +ARLGGDEF +    L    
Sbjct: 314 HFVDLDRFKTVNDTLGHPLGDALLKIAAERLRGCVREGDTVARLGGDEFAIVQTGLDDSN 373

Query: 516 GVVPLAQQVKQIINAVGKQVMEHHGCHYHVGISAGVALARAPYINALELLKDADIACIAA 575
           G   LA ++ + + A      +  G H  +G S GV+LA     +A ELLK AD+A   A
Sbjct: 374 GATRLAARIVEAMAAP----FDLQGHHVVIGASVGVSLAPTDGDDADELLKKADMALYRA 429

Query: 576 KRKGSNQVHFYDDKDKELTYQRNAPKWAVRIAQAIEHNELLLYYQPIKALGPQGKQRMEV 635
           K  G    HF++    E    R A +  +R  +A++  E  L+YQP+  LG +     E 
Sbjct: 430 KADGRGAYHFFERAMDEQLQARRALELDLR--RALQAGEFELFYQPLYHLGDERVTGCEA 487

Query: 636 LLRIQEPCGRILAPAQFIAAAERFKLMTDVDKEVIRKTFLWLSLHEELWADHC-LSINLS 694
           LLR + P   +++PA FI  AE   L+  + + V+R+           W +H  L++NLS
Sbjct: 488 LLRWRHPERGMVSPADFIPLAEEIGLIVQLGEWVLRRA----CAEAANWPEHVRLAVNLS 543

Query: 695 ANSLGAEGMVDYIIAQLERFAIPSQCICFEITETSAIQNRNRAMEMLNQLKKQGFSFALD 754
                  G+V  +++ L    +P+Q +  EITE+  +Q+    M ML+ LK  G   ++D
Sbjct: 544 PAQFRDRGLVRTVVSALAASGLPAQRLELEITESVLLQDSQANMTMLHDLKALGVRISMD 603

Query: 755 DFGTGFASYGYLRELPVNYVKIDGCFIKSLASNAKDYAIVKSIHDVCRVMGIETVAEFVE 814
           DFGTG++S  YLR  P + +KID  F++ +  ++   AI+K++ D+   MG+ T AE VE
Sbjct: 604 DFGTGYSSLSYLRSFPFDKIKIDQTFVRDILHDSDAMAIIKAVLDLGASMGVVTTAEGVE 663

Query: 815 NQEIIERLKSIGINYAQGYAIGRP 838
            Q  ++ L+  G    QGY I RP
Sbjct: 664 TQAQLDALRQQGCAEIQGYFISRP 687