Pairwise Alignments

Query, 308 a.a., transporter DMT superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 309 a.a., rarD protein from Sphingomonas koreensis DSMZ 15582

 Score =  196 bits (498), Expect = 6e-55
 Identities = 104/284 (36%), Positives = 164/284 (57%), Gaps = 2/284 (0%)

Query: 2   PSHTQVSAKGNALAIVSFLLWGLLPLYYQFLPGADITEMLAIRLLCSVPFMLLVFLLLGK 61
           P+  ++   G    + ++ +WG+LPL+Y  L G D+ E++A+R+L SV F+  V + L +
Sbjct: 8   PAPERLDRTGLIQGLGAYGIWGVLPLFYWLLAGTDVGEVVAMRVLWSVAFLAAVIVALRR 67

Query: 62  PLPSLALLRTNLPSVALCALASLIMCVSWYSFTWALTHGQVLAASLGFFINPLFAIGLGV 121
               L +LRT    + L A +SL++  +W  + WA+ +  VL +SLG+F+NPL  + +GV
Sbjct: 68  GPAILQVLRTPRTMLYL-ATSSLLISTNWLVYIWAIQNHHVLESSLGYFLNPLVNVLIGV 126

Query: 122 LFLKDRLTVAQKWAVLLGTLGIGYMVMAYAQLPWLALLMGSFFALYGLCKKFIRFDSLTS 181
           + L+++L  AQ  AV L  +G+  + +      W++L +   F  YGL +K     +L  
Sbjct: 127 VLLREKLNAAQIVAVALAAVGVSVLAVGAGGGIWISLTLAFTFGFYGLVRKVAPVGALEG 186

Query: 182 VTIEAALLTPIAAGYLFWLSATGQSEALSSGTGTMLLYMGSAPVTLLPLIFFALAIRHTS 241
           +T+E  +L P+A GYLFWL   GQ     +G    LL + S  VT +PL+ FA A R   
Sbjct: 187 LTLETLILAPVALGYLFWLGG-GQGLTFGTGWAPTLLMIASGVVTAVPLLLFAAAARRLP 245

Query: 242 LSMVGLLQYIEPTMHFLLAIFLFNETFDSVKAVSFALIWVGLLL 285
            S +GLLQY+ PT+ F+LAI  F ET  +   + FA IW GL++
Sbjct: 246 YSTLGLLQYLAPTIGFILAITFFGETMTAAHMICFAFIWTGLII 289



 Score = 35.4 bits (80), Expect = 2e-06
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query: 215 TMLLYMGSAPVTLLPLIFFALAIRHTSLSMVGLLQYIEPTMHFLLAIFLFNETFDSVKAV 274
           TML    S+ +     + +  AI++  +    L  ++ P ++ L+ + L  E  ++ + V
Sbjct: 80  TMLYLATSSLLISTNWLVYIWAIQNHHVLESSLGYFLNPLVNVLIGVVLLREKLNAAQIV 139

Query: 275 SFALIWVGLLLCSLEALHGLWRSLT 299
           + AL  VG+ + ++ A  G+W SLT
Sbjct: 140 AVALAAVGVSVLAVGAGGGIWISLT 164