Pairwise Alignments

Query, 495 a.a., RNA polymerase factor sigma-54 (RefSeq) from Shewanella loihica PV-4

Subject, 477 a.a., RNA polymerase factor sigma-54 from Klebsiella michiganensis M5al

 Score =  611 bits (1575), Expect = e-179
 Identities = 305/497 (61%), Positives = 387/497 (77%), Gaps = 23/497 (4%)

Query: 1   MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLELDEEQESASIEL 60
           MK  LQL++ Q L MTPQLQQAIRLLQLS+LELQQE+QQAL+SNPLLE  +         
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTD--------- 51

Query: 61  QDDGVTDSFDNKYDDKIELDSSQDNSGVETSDALTQDSMPDELPVDTTWDEVYTASPNSS 120
                         D++E   ++D   ++T DAL Q  MP+ELP+D +WDE+YTA   S 
Sbjct: 52  ------------LHDEVETKEAEDRESLDTVDALEQKEMPEELPLDASWDEIYTAGTPSG 99

Query: 121 SGA-MRDDDMP-FQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLTQTCE 178
           +G   +DD++P +QGET++ L ++L WQ  LTPF+D D AIAT+I+DA+D+ GYLT + E
Sbjct: 100 NGVDYQDDELPVYQGETTQSLQDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTISVE 159

Query: 179 DILEAMGDPEIELDEVEAVLKRVQHFDPIGVAARDLSECLTIQLAQYSDDTPHIANARML 238
           DI+E++GD EI L+EVEAVLKR+Q FDP+GVAA+DL +CL +QL+Q++ +TP I  AR++
Sbjct: 160 DIVESIGDDEIGLEEVEAVLKRIQRFDPVGVAAKDLRDCLLVQLSQFAKETPWIEEARLI 219

Query: 239 IKEHLDLIAGRDFRLLMRKTKLKEDELRDAIALIQTLNPRPGLAITASRDEYVIPDVTVT 298
           I +HLDL+A  DFR LMR T+LKE+ L++A+ LIQ+L+PRPG +I     EYVIPDV V 
Sbjct: 220 ISDHLDLLANHDFRSLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVR 279

Query: 299 KKKGRWVVELNPDSMPKINVNQQYAAMARSTKSQADGQFIRGHLQEAKWFLKSLESRNET 358
           K   RWVVELN DS+P++ +NQQYAAM  ST++ ADGQFIR +LQEA+W +KSLESRN+T
Sbjct: 280 KVNDRWVVELNSDSLPRLKINQQYAAMGNSTRNDADGQFIRSNLQEARWLIKSLESRNDT 339

Query: 359 LLKVTNCIVDFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFEL 418
           LL+V+ CIV+ QQ FFE GEE MKPMVL DIA+AVEMHESTISRVTTQKY+H+PRGIFEL
Sbjct: 340 LLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFEL 399

Query: 419 KYFFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVARRTIA 478
           KYFFSSHV T+ GGE SSTAIRA +KKL+AAEN  KPLSDSK+  +L++QGI VARRT+A
Sbjct: 400 KYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVA 459

Query: 479 KYREAMLIPPSNQRKSL 495
           KYRE++ IPPSNQRK L
Sbjct: 460 KYRESLSIPPSNQRKQL 476