Pairwise Alignments

Query, 246 a.a., 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) from Shewanella loihica PV-4

Subject, 332 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Bifidobacterium breve UCC2003

 Score =  143 bits (360), Expect = 5e-39
 Identities = 88/257 (34%), Positives = 137/257 (53%), Gaps = 18/257 (7%)

Query: 5   DFTFGIHAV-EALLKNSPERVIEMWVLQGRDDQRLMPLIAMAAEYGVSVQQASRKALDDK 63
           D  +G ++V EAL    P   + +      DD R   ++ +A   G+ + +A R  +D  
Sbjct: 69  DLVYGRNSVLEALRVGVPSSTLYIMSRIEHDD-RTREIVKIAGMNGLHMLEADRLEMDRI 127

Query: 64  AGSSQHQGVLVRAKPAKQLNDNDLLALLDK---------------TETPFLLILDGVTDP 108
           A S  HQGV+++  P +  +  +L    +K                  P  + LDGVTDP
Sbjct: 128 ARSGNHQGVILKVDPFQYSSLRELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDP 187

Query: 109 HNLGACLRNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKALQE 168
            NLGA +R+A A G +GVI+P   S  +     KV+ GAA  +P+ +V NL + ++ L+E
Sbjct: 188 QNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKAIEGLKE 247

Query: 169 KGVWIVGAAGEAEHDLYKADLK-GPIAIAMGAEDKGLRRLTRESCDSLASIPMAGSVSSL 227
           +G ++VG  G  +  + +   +  P+ + +G+E  GL RL RESCD++A IP++ SV SL
Sbjct: 248 RGYYVVGLDGGGDKLVGETGFETDPLVVVLGSEGSGLSRLVRESCDAIAGIPISSSVESL 307

Query: 228 NVSVATGICLFEAVRQR 244
           N SVA GI L+   R R
Sbjct: 308 NASVAAGISLYAVSRAR 324