Pairwise Alignments

Query, 468 a.a., replicative DNA helicase (RefSeq) from Shewanella loihica PV-4

Subject, 481 a.a., DNA helicase from Herbaspirillum seropedicae SmR1

 Score =  501 bits (1289), Expect = e-146
 Identities = 255/459 (55%), Positives = 344/459 (74%), Gaps = 4/459 (0%)

Query: 7   FQAKKKPRDIQIDALKMPPHSIEAEQSVLGGLMLDSDAWDKVAEAVVKDDFYSRSHKMIF 66
           F+ +K+  D QIDAL++PPHSIEAEQSVLGGL+LD+ AWD++A+ V  +DFY   H++IF
Sbjct: 15  FRGQKESSDPQIDALRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVSAEDFYRYDHRIIF 74

Query: 67  TAMEALVAAGQPIDLITVSEQLELEDNLEDAGGFAYLGEIAKNTPSAGNILSYAAIVRER 126
             +  L+ + +P D+ITV E +      E+ GG  YL  +A+NTPSA NI  YA IVR+R
Sbjct: 75  EHIVKLINSTKPADVITVYEAMSTSGKAEEVGGLVYLNALAQNTPSAANIRRYAEIVRDR 134

Query: 127 AVVREMIKVANEIADAGFNPEGRNSSELLDLAESKVFKIAEQRANANEGPEGIKTILEKT 186
            ++R++I VA+EI+   FNP+G++   +LD AESK+F IAE+ +  ++G   I+ +L + 
Sbjct: 135 GILRKLITVADEISGNAFNPQGKDVKSMLDEAESKIFAIAEEGSRGSQGFMEIQPLLTQV 194

Query: 187 VDKIEELYN-NPHNGVTGVSSGFNDLDRMTAGFQSGDLIIVAARPSMGKTTFAMNLCEQA 245
           V++I+ELYN +  + +TGV +GF DLD+MT+G Q GDLIIVA RPSMGKT F++N+ E  
Sbjct: 195 VERIDELYNRDSSSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGKTAFSINIGEHV 254

Query: 246 ALHEDKPVLIFSLEMPSEQIMMRMLASLGRVDQTKIRTGQLDDDDWARVSSTMGIMLEQG 305
           A+    PV +FS+EM   Q+ MRML S+GR+DQ ++RTG+L D+DW R++  +  M    
Sbjct: 255 AIESGLPVAVFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRLLDEDWPRLTHAIQKM-NDA 313

Query: 306 KMYIDDGSGLTPTEVRSRARRIAREYGGLSMIMIDYLQLM--QVPALSDNRTLEIAEISR 363
           + YID+   L+P E+R+R+RR+AR+ G L +I+IDYLQLM     + S+NR  EI+EISR
Sbjct: 314 QFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNGGSSSENRASEISEISR 373

Query: 364 SLKALAKELEIPVIALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYND 423
           SLK LAKEL  PVIALSQLNRSLEQR +KRPV SDLRESG+IEQDAD+I+FIYRDEVYN 
Sbjct: 374 SLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNP 433

Query: 424 DSEDKGTAEIIIGKQRNGPIGRVRLTFQGQFSRFDNYAG 462
           DS DKGTAEIIIGKQRNGPIG +RL+F G ++++DNY G
Sbjct: 434 DSPDKGTAEIIIGKQRNGPIGSIRLSFLGMYTKYDNYIG 472