Pairwise Alignments

Query, 1076 a.a., Beta-galactosidase (RefSeq) from Shewanella loihica PV-4

Subject, 1024 a.a., beta-galactosidase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  656 bits (1692), Expect = 0.0
 Identities = 397/1046 (37%), Positives = 550/1046 (52%), Gaps = 71/1046 (6%)

Query: 35   WQDHTLFEVNKLAPHASFFGYESEPLALLDEMDRSQLYLDLNGRWRFHLAKNPDATPKEF 94
            WQ      +NKL PH   + Y           ++S  Y+ LNG+W+FH  KNPD  PK+F
Sbjct: 33   WQSQYAVGLNKLDPHTYVWPYADASEVEKGTFEQSPYYMSLNGQWKFHWVKNPDTRPKDF 92

Query: 95   AAPEFDASHWGSIQVPGNFETQGYGHAIYLDERYPFDTKW-------PDAPSDHNPTGLY 147
              P +    W  I+VPGN+E QGYG AIY++E Y FD K        P  P   N  G Y
Sbjct: 93   YKPSYYTGGWADIKVPGNWERQGYGTAIYVNETYEFDDKMFNFKKNPPLVPYKENEVGSY 152

Query: 148  RKTFTLPAHWQQKQVFIHIGAARSALTLFVNGREVGYSQGAKTPAEFDITPYLQAGDNLV 207
            R+TF +PA W+ ++V +      S   ++VNG  +GY+QG+KT AE+DIT  L  G+N +
Sbjct: 153  RRTFKVPAGWEGRRVVLCCEGVISFYYVWVNGEFLGYNQGSKTAAEWDITDKLTDGENTI 212

Query: 208  AMQLIRWSDASYLESQDMLRMTGIEREVYLYATPKQRIEDIQVVTHLNEDLTRAKLAIRV 267
            A+++ RWS  +YLE QDM R++GIER+VYLY+TP+Q I D +V + L ++  +  +   +
Sbjct: 213  ALEVYRWSSGAYLECQDMWRLSGIERDVYLYSTPEQYIADYKVTSLLEKEHYKEGI-FEL 271

Query: 268  DIASHQPGVRALELEARLLDPQGKPVAKANQRLSLKGDAKPVF--SQTLISPKLWNAEMP 325
            ++A          +   L D   K V + +++L   G    +    Q L   + WNAE P
Sbjct: 272  EVAVGGTASGTSSIAYTLKDASDKTVLEGSRKLESHGSGNLIVFDEQRLPDVRRWNAEHP 331

Query: 326  NLYRLILTLKTEKGETLQVASQQIGVRKIAIENGQLKVNNKAITIRGVDRHETDPQTGHV 385
             LY L+L LK   G+  ++   ++G R   I+NG+  +N   + ++GV+RHE   Q G  
Sbjct: 332  ELYTLLLELKDAGGKVTEITGTKVGFRTSEIKNGRFCINGVPVLVKGVNRHE-HSQLGRT 390

Query: 386  VSRETMELDIRLMKQNNINAVRSSHYPNHPYWLSLADRYGLYVIDEANIESHPLAIDDKT 445
            VS+E ME DIRLMKQ+NIN VR+SHYP HPYW  L DRYGLYVIDEANIESH +      
Sbjct: 391  VSKELMEQDIRLMKQHNINTVRNSHYPAHPYWYQLCDRYGLYVIDEANIESHGMGY-GPA 449

Query: 446  QLGNEMSWLPAHQARIERMVERDKNHPSVIIWSLGNEAGEGKLFERLYQWIKRRDPNRPV 505
             L  + +WLPAH  R  RM ER KNHPSV+IWSLGNEAG G  FER Y W+K  + NRPV
Sbjct: 450  SLAKDSTWLPAHIDRTRRMYERSKNHPSVVIWSLGNEAGNGINFERTYDWLKSVEKNRPV 509

Query: 506  QYEPAGEAPYTDIVAPMYPSIERIREYAERAS-DRPLIMIEYAHAMGNSVGNLQDYWDVI 564
            QYE A E   TDI   MY S++ IR Y  R    RP I+ EY HAMGNS G +++YW+V 
Sbjct: 510  QYERAEENYNTDIYCRMYRSVDVIRNYVARKDIYRPFILCEYLHAMGNSCGGMKEYWEVF 569

Query: 565  EAYPQLQGGFIWDWVDQALAFSNDLGQRYWAYGKDYHP-DMPTDGNFLNNGLVDPDRNPH 623
            E  P  QGG IWDWVDQ+    +  G+ YW YG DY P D+P+ GNF  NGLV+  R PH
Sbjct: 570  ENEPMAQGGCIWDWVDQSFREVDKDGKWYWTYGGDYGPKDVPSFGNFCCNGLVNAVREPH 629

Query: 624  PHLSEVKKVYQPIKLRDFKVEGDKASVNLINGFDFASTSGLSLNWTLQKDGKIIASKRQA 683
            PHL EVKK+YQ IK     ++    +V + N FDF+  +   L+W +  D   + ++   
Sbjct: 630  PHLLEVKKIYQNIK--STLIDKKNLTVRVKNWFDFSDLNEYILHWKVTGDDGTVLAEGNK 687

Query: 684  MPILSPGEQARVSLTLPGKQSLSAPFEYHLLLEVLVDTPRPLLPSDLRIAFEQFALPRFG 743
                 P   A V LTL   Q      E +L L        PL+ +   IA++QF LP  G
Sbjct: 688  EVACEP--HATVELTLGAVQLPKTIREAYLDLGWTRKKSTPLVDTAWEIAYDQFVLPASG 745

Query: 744  TKAAYQVKKNQAKISEDSGSYRLTSGELSYEFDKRSGWLTQIYQEGEPQLKAPLMANFWR 803
                   K    K SE        +G+ ++E D+ +G L  +  +GE  L +P+  + +R
Sbjct: 746  -------KVWNGKPSE--------AGKTTFEVDENTGALKSLCLDGEELLASPVTISLFR 790

Query: 804  APTDNDLGNQMPD--WAGAWQDAATELEVTAIDA--DLALGLTISQTHAEKGFSLRTRYS 859
              TDND  ++M    W  A     T+  V+  ++       + I     +K       Y+
Sbjct: 791  PATDNDNRDRMGAKLWRKAGLHTLTQKVVSLKESKTSATAQVNILNVTGKKVGDATLEYT 850

Query: 860  LDNAGRLMVDSQFIPGNKPLADLPRFGFSTRLGFEHRYLSYFGRGPEETYADRQSGNPLG 919
            L++ G L V + F P    +  + R G +  +   +  ++Y GRG  ETY DR     +G
Sbjct: 851  LNHNGSLKVQTTFQPDTTWVKSIARLGLTFEMNDTYGNVTYLGRGEHETYIDRNQSGKIG 910

Query: 920  WYALPIEQTYHRYPRPQETGQRTQVRYAAVTDQRGQG-WLAIANQAHAGEQDRKEADEVA 978
             Y    E+ +H Y  PQ TG RT VR+  + D  G+G W+              E+D  +
Sbjct: 911  IYTTTPEKMFHYYVIPQSTGNRTDVRWVKLADDSGKGCWI--------------ESD--S 954

Query: 979  TLQTSLWPFAQADIDFRRGDAQDSASGLVAVTRNHGAEIPLREFVTWNIDYRQMGVGGDT 1038
              Q S  PF                S L+     H  ++     +T ++D +Q GVG  T
Sbjct: 955  PFQFSALPF----------------SDLLLEKALHINDLERNGRITVHLDAKQAGVGTAT 998

Query: 1039 SWGRPVHGPYRIKAEPIRFGFTLMPV 1064
              G  V  PY +      F FT+ PV
Sbjct: 999  C-GPGVLPPYLVPLGKQTFTFTIYPV 1023