Pairwise Alignments

Query, 556 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

Subject, 546 a.a., putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon from Dechlorosoma suillum PS

 Score =  199 bits (505), Expect = 3e-55
 Identities = 140/463 (30%), Positives = 245/463 (52%), Gaps = 35/463 (7%)

Query: 76  IAERRDAEIAITLSDDKMSAEMTLTAPWGGKSLTLQDILRALKAEQISMGLSKVKIEALL 135
           +AE  DA+  ++++ DKM+A +++T P GG  +    I RAL  + ++ G+     E+ +
Sbjct: 74  VAEAVDAKAEVSVAGDKMAAFLSITPPQGGAPIDDAAIRRALAQQGVTTGIR----ESAI 129

Query: 136 AKLPTLAPGESCSEVFAHGKPAINGTNAIVERKVPLARERLLQPQERADGTVDMRNLGEI 195
           A+   LA G++ + + A G+  ++G +  +E  VP +R R+  PQ    G +D RNLGEI
Sbjct: 130 AQ--ALALGQADNLLIAEGRAPVHGEDGRIEVLVPESRSRV--PQVNEKGLMDYRNLGEI 185

Query: 196 IMVKPNDKLMVKIPATEGTKGYNVQGEPLLPIAGKDLKLTAG-TGAELLESDPNVLVATV 254
           + V     +M +IPAT GT G  V G  +  +AGK+   +   +G     +DPN L A +
Sbjct: 186 LTVHAGQAVMQRIPATPGTPGETVSGAVIPALAGKETMFSPNLSGVAPDPADPNKLAAAI 245

Query: 255 AGQPVETKTGMQVDDVLQIKDVDIGYGNVDFKGSVLVTGDVHEGMVVKSTGDITVMGFVD 314
            GQPV T+ G+ V+    + +V I  GN+DF G+V V GDV  GM ++++GDI + G V+
Sbjct: 246 TGQPVRTREGVIVEPTYTVNEVTINSGNIDFDGAVTVKGDVQAGMTIRASGDIEIGGTVE 305

Query: 315 SAQLIADGDITVSKGVIGRQLKED----QLSTKLSAKGQISAQFVQYSELQAEGDILVTK 370
           +A ++A GDI +  G IG   ++D    ++ + +   G  +A +VQ ++++A   I +  
Sbjct: 306 AAVIVAGGDIVIKGGAIGAGGRKDAQGNEIPSYIQCGGSFTATYVQQAKVEAGDSIFIDD 365

Query: 371 QLLHSHTQTAGKLIVSDANGRRGDLVGGVAQADKGVKAVIIGATA--GTRTEVFCAMKCG 428
             + S+     +++V   + +RG ++GG AQA   VKA +IG+ A  GTR ++    K  
Sbjct: 366 VAMQSNLIAINQIVV--GHKQRGHIIGGRAQATLLVKAKVIGSGAHIGTRIDIGLDPKLR 423

Query: 429 ELKEEL----KQLDHGIKHMVVAKLNIEASL-NKLPPKAEWQDDALMVEQVKGMLEEKRR 483
             ++ L    +Q++  +   VV  L + A L  ++PP+         +++ +   E   R
Sbjct: 424 AQQQRLVLHRQQVEEQLA-QVVKLLELAAKLPERVPPET--------LKRARITRESLLR 474

Query: 484 ITEEWSREEQEFNAIKQEVENYYQEYRIEACKHIFANVELHIG 526
                  EE     + QE     Q  ++ A + ++  +E+H G
Sbjct: 475 TLTRLGEEE----TLLQEQLRLAQNAKVIAEQAVYEGMEVHCG 513