Pairwise Alignments

Query, 825 a.a., diguanylate cyclase/phosphodiesterase (RefSeq) from Shewanella loihica PV-4

Subject, 1001 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N1B4

 Score =  326 bits (835), Expect = 5e-93
 Identities = 182/470 (38%), Positives = 277/470 (58%), Gaps = 8/470 (1%)

Query: 334 TSLPRKPSWFPDEVDLIHLATRQLADNMQGMENEVDEYTHELERLAMLDTLTGLPNKAML 393
           +S  R PS    E  LI++AT      + G+  E       +  +   D LTGLPN+ +L
Sbjct: 507 SSTVRSPS--STETRLINMATP-----LAGIAIERQLTEKRIRYMGDHDALTGLPNRTLL 559

Query: 394 HHELQTAIACIASEEDCVVLMFLDLDEFKRINDTLGHIQGDELLKIVAARLTNSVREMDT 453
              L+ AI         V ++FLDLD+FK +ND+LGH  GDELLK VA R+   VR  DT
Sbjct: 560 EDRLKQAILYAQRYSRLVTVVFLDLDKFKLVNDSLGHSAGDELLKTVAQRMLECVRRTDT 619

Query: 454 VFRQGGDEFLILL-RQVRDEQEVSNVIHRIFSALQHPVVLGSHKLIVTTSIGLAYCNTSQ 512
           V R GGDEF+I+L  Q  D   V+  +H+I  A+  P+ L  H L VT S+GLA      
Sbjct: 620 VVRLGGDEFVIILFDQPSDLDGVTPALHKIQEAILRPIQLSGHTLHVTCSMGLATYPADG 679

Query: 513 LRAEELIQHADLAMYQAKSAGRSNYRVFSEEMLHQANNRLMIEQSIGAAINEEQLVLFLQ 572
              + L+ +AD AMY+AK  GR++Y+ ++ EM ++   +L ++  +  A+N ++ +L  Q
Sbjct: 680 SDTDTLLSNADAAMYRAKELGRNSYQFYTSEMNNKVQGKLAMQDGLRNALNHDEFLLLYQ 739

Query: 573 PIVELPSGRLRGFEALIRWFHPERGLIMPGDFIPDIEHSEAIIEVGNYVIRKASELVAQL 632
           P V+L SG++ G EALIRW HPE G++ P  FIP  E +  I+ +G++VI  A       
Sbjct: 740 PQVDLQSGQIIGVEALIRWQHPELGMVSPVKFIPQAEETGLIVPIGDWVIHTACRQNKAW 799

Query: 633 KSAGWPELYIAVNLSAKHFLAPDLLNVVRQEVEAQQISAQSLLLEVTEESVIEQVEQAMA 692
           + AGWP + ++VN+SA+ F+  DL++ V   ++   +    L LE+TE  +++ ++QA++
Sbjct: 800 QDAGWPPITMSVNISARQFIERDLIDRVMHALQETGLDPMYLELELTESLIMQDLQQAIS 859

Query: 693 AMAALKALGVRIAIDDFGTGYSSLSYLKQLPFDLLKIDRCFTANVLDGEADAHIITTVIE 752
            M  L+++G+ ++IDDFGTGYSSL+ LK  P   LKID+ F  ++ D E D  I T VI 
Sbjct: 860 KMKELQSMGISLSIDDFGTGYSSLAALKSFPIARLKIDQSFVRDLPDNENDKAIATAVIS 919

Query: 753 LAHNLGRQVVAEGIETQQQAECLSCQRCELGQGYYFSRPLDVASVFKVLQ 802
           L H L  +V+AEG+ET++Q   L    C+  QG++FS  +    +  +L+
Sbjct: 920 LGHKLNLKVIAEGVETEEQQTFLRENGCDEIQGHFFSSAVSCDEISVLLR 969