Pairwise Alignments

Query, 825 a.a., diguanylate cyclase/phosphodiesterase (RefSeq) from Shewanella loihica PV-4

Subject, 1413 a.a., sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  312 bits (800), Expect = 7e-89
 Identities = 183/464 (39%), Positives = 272/464 (58%), Gaps = 11/464 (2%)

Query: 340  PSWFPD-EVDLIHLATRQLADNMQGMENEVDEYTHELERLAMLDTLTGLPNKAMLHHELQ 398
            P  F D +  L+     Q+A  ++  +NE      +L  LA+ D+LTGLPN+ +L   ++
Sbjct: 934  PDAFSDSDARLMTSLADQIAVAIERKQNE-----EQLTYLALHDSLTGLPNRTLLLERIE 988

Query: 399  TA-IACIASEEDCVVLMFLDLDEFKRINDTLGHIQGDELLKIVAARLTNSVREMDTVFRQ 457
             A +  +  +     +M +DLD FK IND+ GH  GD LL++V+A +   +R  DTV R 
Sbjct: 989  QARLRSLRGKGRSFAVMMIDLDRFKIINDSHGHAVGDRLLQMVSAAVRPVLRPADTVARL 1048

Query: 458  GGDEFLILLRQVRDEQEVSNVIHRIFSALQHPVVLGSHKLIVTTSIGLAYCNTSQLRAEE 517
            GGDEF ILL  V   +EV +V  R+  A++ P  + +  L  + S+G+         A+E
Sbjct: 1049 GGDEFAILLEDVATPREVVHVARRVIKAVERPARVANKLLRTSASVGIVLRTDGYGSADE 1108

Query: 518  LIQHADLAMYQAKSAGRSNYRVFSEEMLHQANNRLMIEQSIGAAINEEQLVLFLQPIVEL 577
            L++ AD+AMYQAK  GR  +RVF+  M  QA + + +E  +GAA+   Q  L  QP+ + 
Sbjct: 1109 LLRDADIAMYQAKEQGRGRFRVFNRTMHQQAMDAMNLENDLGAALRWGQFELDYQPVFDT 1168

Query: 578  PSGRLRGFEALIRWFHPERGLIMPGDFIPDIEHSEAIIEVGNYVIRKASELVA--QLKSA 635
             S  L GFEAL+RW HP RGLI P  FIP  E +  I  +G++V+  A   +A  +L+  
Sbjct: 1169 RSRALLGFEALVRWRHPLRGLIPPTAFIPVAEETGIITRLGHWVLETALTALARWRLQIP 1228

Query: 636  GWPELYIAVNLSAKHFLAPDLLNVVRQEVEAQQISAQSLLLEVTEESVIEQVEQAMAAMA 695
            G  +LY+AVN+SA  F  P L   VR  ++   + A  L +E+TE ++++    A+  ++
Sbjct: 1229 GIDDLYVAVNMSALQFAQPTLPGSVRDALQKTGLPASCLKVEITETAIMQDPTTALQRIS 1288

Query: 696  ALKALGVRIAIDDFGTGYSSLSYLKQLPFDLLKIDRCFT--ANVLDGEADAHIITTVIEL 753
            AL+ LGV I IDDFGTGYSSL+YL++ P D LK+DR F   +   +GE +  I+  V+ L
Sbjct: 1289 ALRDLGVGIGIDDFGTGYSSLAYLQRFPVDTLKVDRSFVSQSTTPEGEGNREIVRAVVVL 1348

Query: 754  AHNLGRQVVAEGIETQQQAECLSCQRCELGQGYYFSRPLDVASV 797
            AH+L   VVAEG+ET++Q   L+   C+  QGY  SRP+  A +
Sbjct: 1349 AHSLSLAVVAEGVETEEQFAFLAGLGCDAVQGYLLSRPVPEADI 1392