Pairwise Alignments

Query, 718 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

Subject, 732 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  667 bits (1720), Expect = 0.0
 Identities = 353/738 (47%), Positives = 466/738 (63%), Gaps = 29/738 (3%)

Query: 1   MKKLLVSVALAAAFGAHADEGMWQPYQLPAMADELKAKGLEIDAKSISKLTEFPMNAVIS 60
           M+  LV+  +     A ADEG WQPYQ+P++AD+L A+G++I A  ++ LT +PMNAV+ 
Sbjct: 1   MRIALVAALVLTCGIATADEGQWQPYQMPSIADKLSARGIDIPADKLADLTSYPMNAVVG 60

Query: 61  LGGCTASFVSPKGLVVTNHHCAYGSIQYNSTPEKNLLKDGFLAKNYGEELPATPGSRIYV 120
           LG CTASFVSP+GLVVTNHHCAY +IQYN+  E N L+ GFLA +  +E  A P  R+Y+
Sbjct: 61  LGYCTASFVSPQGLVVTNHHCAYKAIQYNTKKEHNYLEQGFLATSMDKEPSAGPNERLYI 120

Query: 121 TEAVTNVTGEVKAGLENKVGNDFYQGIEAKEKQLVAQCEADDGYRCQVYSFHGGLEYYLV 180
           TEAVT+VT +V   L        Y+ IE   K L+  CEADD YRC V SFH GLEYYL+
Sbjct: 121 TEAVTDVTSDVTKDLSQDPLKR-YEEIENHSKALIKSCEADDNYRCNVRSFHNGLEYYLI 179

Query: 181 KQLEIRDVRLVYNPAASVGKYGGDIDNWMWPRHTGDFSFYRGYVSKDGKPADFSKDNVPY 240
           KQL IRDVRLVY P  SVG YGGDIDN+ +PRH+GDF+F R YV KDGKPA FS+DN+PY
Sbjct: 180 KQLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFAFLRAYVGKDGKPAAFSEDNIPY 239

Query: 241 EPKSFLKVSAKGVSDGDFVMVAGYPGRTNRYRTANEVENQFEWAYPEGKMLRERFIEIIK 300
            PKS+LKV+A GV  GD V VAGYPG TNRY   +E++   +W YP      +  I+ I+
Sbjct: 240 TPKSYLKVNADGVKAGDGVFVAGYPGTTNRYNLTSELKFASDWLYPTQAKRYQLQIDTIE 299

Query: 301 ETAPEGSDERIKYESLIAGLANYAKNFTSMIEFYGKSTMLDDRKAREAALTAWINKDSKR 360
               + +D  IKY   +A +AN  K    ++  +  + ++  ++ RE    AW+ K+   
Sbjct: 300 AMGQKDADIAIKYAGNMASMANRMKKLNGLLAGFKATDIVGIKQQRENDFLAWLTKNPNL 359

Query: 361 QAQYGQTMAELDKLIKESQEHQARDIILGYIGYTTMLPTARSLYRLANEKQLDDMAREPG 420
                  ++EL+ L+ E Q     +        +T+L  A +LYRLA EKQ  D  RE G
Sbjct: 360 NQ---NLISELEVLLAEQQLQTQTNYYFTNAQSSTLLTAANNLYRLAKEKQKSDAEREIG 416

Query: 421 YQDRDMTRFKSGLERIDRRYAPSVDKAVVLDLLSRYAKLPSEERIPELDKAFGIGKKFDA 480
           YQ+RD+  F S L+RID  +   VDK + L  L+ Y   P+  R+  LD    +  K   
Sbjct: 417 YQERDLAMFSSRLKRIDSSFDVKVDKTLWLQDLNAYLSQPN--RVAALDNMLNLNDK--N 472

Query: 481 AKLSKVLDKMYAKTELGDKATRLAWMDKSVADFKASKDPFIQFAVAMYDTDMAQEKKEKE 540
             L+  LD +Y+ T L D+A RLAWM+     F+ S DPFI+ AVA+YDT+MAQEK EK 
Sbjct: 473 VSLAAKLDGLYSLTTLTDQAQRLAWMEADAKAFETSSDPFIRLAVALYDTNMAQEKAEKI 532

Query: 541 LYGKLMKVRPQYMDAIIAYNKELGKPVYADANSSLRVTVGHVKGYSPQDGLVAVPFTRLE 600
           L GKL   RP YM A+I Y K    PVY DAN +LR++ G V GY  +D L   PFTRL+
Sbjct: 533 LAGKLSTARPAYMAAVIDYYKANNWPVYPDANGTLRISYGMVDGYQSRDALYKQPFTRLD 592

Query: 601 GIVAKDTGEDPFDAPKKQLELIKQKQYGDYYVKSI---------------------DSVP 639
           GIVAK TG +P++APKK L+ I  +++GD+ VKS+                     +SVP
Sbjct: 593 GIVAKHTGVEPYNAPKKLLDAISVQRFGDHLVKSVYQDPRGWICRLFSCLDKPEEFNSVP 652

Query: 640 VNFLSTLDTTGGNSGSPTLNGRAELVGLLFDGVYESIIGDWGYDTDTNRSIQVDSRYMLW 699
           VNFLS++DTTGGNSGSP  NG+ ELVGL FD  YE+I  DW ++    R++ VD RY+LW
Sbjct: 653 VNFLSSVDTTGGNSGSPVFNGKGELVGLNFDSTYEAITKDWFFNPTITRAVHVDIRYILW 712

Query: 700 VMKYLDHADNLLAEMEIV 717
           +M  +DHADNL+ E+++V
Sbjct: 713 MMDEVDHADNLIKELDLV 730