Pairwise Alignments

Query, 333 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

Subject, 324 a.a., transcriptional activator FtrA from Pseudomonas fluorescens FW300-N1B4

 Score =  213 bits (542), Expect = 5e-60
 Identities = 120/318 (37%), Positives = 184/318 (57%), Gaps = 6/318 (1%)

Query: 16  MQHVPN-VSVIVFNGFSPFHISVPSIVFG--RDTLNEAFFNLQFIAGEEGSIMSDIGMEI 72
           MQ  P  V+++ ++G   F   +   +FG  R   +  ++  + +A ++G + +  G+++
Sbjct: 1   MQPTPGLVAILAYDGLCTFEFGIAVEIFGLARPEFDFPWYEHRIVAVDQGPMRAMGGIQV 60

Query: 73  HARAKLDTLEKADIIIVPYWRTVDERPNDQLIEALRLAHERGTLIVGLCLGGYVLAFAGL 132
            A   ++ LE+A  II+P WR       + L+ ALR AH RG  ++ +C G +VLA  GL
Sbjct: 61  LADGGMELLEEARTIIIPGWRDRSAAVPEPLLAALRQAHARGARLLSICSGVFVLAATGL 120

Query: 133 LDGKRAATHWELEQDFTQRFPETLLDTNALYVEDGGVITSAGTAAGIDCCLFVFRKYYSS 192
           LDG  A THW    +  +RFP+  +D + LYV+ G +ITSAG+AAGID CL +  + + +
Sbjct: 121 LDGHGATTHWRYTAELAERFPDIQVDPDVLYVDSGQLITSAGSAAGIDACLHLVARDFGT 180

Query: 193 AIANRIARRMVVPPYRDGGQAQFIEQPI-PITTSDLRINELMERIRNDIGHKYTLDELAE 251
            +AN +ARR+V+ P R GGQAQFI  P+ P   SDL  + +M+  R  +     + +LA 
Sbjct: 181 QVANSVARRLVMSPQRTGGQAQFIPSPVSPTPRSDL--SRVMQWARERLHEPLEVRDLAS 238

Query: 252 SVMMTRRTFTRKFHKATGMAFGEWLASERLNLAQELLESTDLTIEQIVTKTGFSSVFIFR 311
              M+ RTF R+F +A+G+    WL  ERL  A+ELLEST  + EQI    G+ SV  FR
Sbjct: 239 EAAMSERTFLRRFTEASGLPPKAWLQHERLARARELLESTRQSTEQIAQHCGYRSVESFR 298

Query: 312 DKFKGRYAVTPNRWRKTF 329
             F+    V P+ +R+ F
Sbjct: 299 VAFRSVVGVPPSVYRERF 316