Pairwise Alignments

Query, 333 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

Subject, 335 a.a., Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain from Paraburkholderia bryophila 376MFSha3.1

 Score =  286 bits (733), Expect = 4e-82
 Identities = 144/310 (46%), Positives = 196/310 (63%), Gaps = 2/310 (0%)

Query: 22  VSVIVFNGFSPFHISVPSIVFGRDTLNEAF--FNLQFIAGEEGSIMSDIGMEIHARAKLD 79
           V+VI F+  SPFH+SVP +VFG D        F+ +  A E G + +  G  I     L+
Sbjct: 23  VAVIAFDRISPFHLSVPCVVFGEDRSGAGVPGFDFRVCAAETGPLTTTAGFSIAVTHGLE 82

Query: 80  TLEKADIIIVPYWRTVDERPNDQLIEALRLAHERGTLIVGLCLGGYVLAFAGLLDGKRAA 139
            L +AD IIVP WR   E P   L++ALR AH RG  +VGLCLG +VLA AG+LD + A+
Sbjct: 83  ALAEADTIIVPSWRDPAEPPPAALLDALRAAHARGAQLVGLCLGAFVLAAAGILDDRPAS 142

Query: 140 THWELEQDFTQRFPETLLDTNALYVEDGGVITSAGTAAGIDCCLFVFRKYYSSAIANRIA 199
           THW    DF  R+P   LD + LYV+DG V+TSAGTAAG+DCCL V RK   + +AN +A
Sbjct: 143 THWAWADDFAARYPRVRLDRDVLYVDDGNVLTSAGTAAGLDCCLHVLRKMCGAEVANFVA 202

Query: 200 RRMVVPPYRDGGQAQFIEQPIPITTSDLRINELMERIRNDIGHKYTLDELAESVMMTRRT 259
           RR+VV P+R GGQAQ+I+QP+P    + R++ L++ +  ++   +TLD LA   +M+RRT
Sbjct: 203 RRLVVSPHRQGGQAQYIQQPLPPNVREDRLSGLLDWVCGNLDAPHTLDSLAARALMSRRT 262

Query: 260 FTRKFHKATGMAFGEWLASERLNLAQELLESTDLTIEQIVTKTGFSSVFIFRDKFKGRYA 319
           FTR+F  ATG   G WL ++RL  AQ+LLES+D ++E I    GF S    R  F   + 
Sbjct: 263 FTRRFRLATGTTVGAWLLAQRLTRAQQLLESSDQSVEAIAGIAGFGSAASLRQHFADAFR 322

Query: 320 VTPNRWRKTF 329
            +P+ WR+ F
Sbjct: 323 TSPSAWRREF 332