Pairwise Alignments

Query, 313 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

Subject, 313 a.a., ABC-type multidrug transport system, ATPase component from Sphingomonas koreensis DSMZ 15582

 Score =  220 bits (560), Expect = 4e-62
 Identities = 127/304 (41%), Positives = 174/304 (57%), Gaps = 9/304 (2%)

Query: 8   LVIDSLRKTYKGGVEAVKGISLKVEAGDFFALLGPNGAGKSTTIGVICSLVQKSSGKVKV 67
           L +  + KTY  G +A+  + L +  G+ FALLGPNGAGK+T I +IC +V  SSG + V
Sbjct: 5   LSVRGVSKTYASGHKALGSVDLDINKGEIFALLGPNGAGKTTLISIICGIVTPSSGTIVV 64

Query: 68  FEHDIDTQLELAKMSIGLVPQEFNFNQFETVQQIVVNQAGYFGVSREVAFERAKKYLSQL 127
             HD  ++   A+M IGLVPQE + + FETVQ         FG     A+    + L  L
Sbjct: 65  DGHDAISEPRAARMKIGLVPQELSVDMFETVQATTRYSRRLFGRPANDAY--IDQVLKDL 122

Query: 128 DLWDKRNSPSRALSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLTDLNR 187
            L+DKRNS    LSGGMKRR++IA+AL HEP +L LDEPTAGVD+ LRR MW  +  L  
Sbjct: 123 SLYDKRNSKVMELSGGMKRRVLIAKALAHEPDILFLDEPTAGVDVSLRRDMWKLIGSLRE 182

Query: 188 QGVTIILTTHYLEEAEMLCRNIGIIDKGELVECTSMKSLLSRLNMETFVFDLKADINEAP 247
           +G TIILTTHY+EEAE +   +G+I+KGEL+       L+ +L        L   +   P
Sbjct: 183 RGTTIILTTHYIEEAEEMADRVGVINKGELLLVEGKAELMKKLGKREMDIALVEPMTAIP 242

Query: 248 -TLEGISCRLTDP-----HTLEVDVEKAHSINSVFAQLTEQGIEVLSMRNKANRLEELFV 301
             LE     L D      +T +   E+   I S+  +L + GI+   +    + LE++FV
Sbjct: 243 GELEEWHLALEDEGHRLRYTFDAQAERT-GIPSLLRKLGDLGIQFKDLDTSKSSLEDIFV 301

Query: 302 ELVE 305
           +LVE
Sbjct: 302 DLVE 305