Pairwise Alignments

Query, 789 a.a., penicillin-binding protein 1B (RefSeq) from Shewanella loihica PV-4

Subject, 851 a.a., peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA from Rahnella sp. WP5

 Score =  188 bits (478), Expect = 9e-52
 Identities = 103/253 (40%), Positives = 151/253 (59%), Gaps = 5/253 (1%)

Query: 194 RLFVATDKIPKAIVDALILVEDRSFYEHHGVNPFAIIRAAMVNISAGRTVQGGSTLTQQL 253
           R+ +  D+IP  +V A I  ED  FYEHHGV+P  I RAA V + +G   QG ST+TQQL
Sbjct: 66  RIPLKLDQIPPELVHAFIATEDSRFYEHHGVDPIGIFRAASVALVSGHASQGASTITQQL 125

Query: 254 AKNFFLSSERSIIRKLREALMAIIIDFRYDKDEILEAYLNEVYMGQDKSRAVHGMGLASQ 313
           A+NFFLS ER++ RK++EA +AI I+    KDEILE YLN++Y+G       +G+G A+Q
Sbjct: 126 ARNFFLSPERTLTRKIKEAFLAIRIEQMMSKDEILELYLNKIYLGY----RAYGVGAAAQ 181

Query: 314 FYFGRPIAELTLPQQAFLVAAIKGPSYYNPWRFPERAQERRDLVLRLLMESGQLPVAQYK 373
            YFG+ + +LTL + A +    K PS +NP    +R+  RR+ VL  +++   +  AQY 
Sbjct: 182 VYFGKNVNQLTLSEMAVIAGLPKAPSTFNPLYSHDRSLARRNTVLARMLDEKYITQAQYD 241

Query: 374 AAVESPLGVRKASKPVHQKLPAFFAVVRGELSRRFGDSLLQQSGIKVYTTLDPLAQEAAE 433
            A   PL     +  +    P    +VR E+ +R+GD+     G  VYTT+    Q AA+
Sbjct: 242 QARAEPLVANYHAPHIEFSAPYLTEMVRQEMVKRYGDN-AYNDGYMVYTTITKKTQLAAQ 300

Query: 434 QAVRSTMKNLEQR 446
           +A+R+ + N + R
Sbjct: 301 EALRTNVLNYDMR 313



 Score = 81.3 bits (199), Expect = 2e-19
 Identities = 68/217 (31%), Positives = 99/217 (45%), Gaps = 17/217 (7%)

Query: 464 IAAMVGDKVPSYQGFNRAVEIRRPIGSLIKPFVYATALTHGDKYTLATPLKDEPITLTNS 523
           I A+VG    +   FNRA +  R +GS IKPF+Y  A+  G   TLAT L D PIT  ++
Sbjct: 439 IEALVGGFDFNQSKFNRANQAVRQLGSNIKPFLYTAAMDKG--LTLATILNDMPITRWDA 496

Query: 524 -QGKTWSPQNVNKQFSGEVPLMTAFKKSMNVPTVNLGMAIGTDAVATTLAKSGWD-ETIP 581
             G  W P+N    + G + L     +S NV  V    A+G D  A  L + G+    I 
Sbjct: 497 GAGTDWRPKNSPPTYYGPIRLRQGLGESKNVVMVRAMRAMGVDYAAEYLQRFGFPAANIV 556

Query: 582 EYPSMLLGAVNGSPLMVAQVYQTLADNGRYRQLNAVTHVLDADNQ------PLSASQR-- 633
              S+ LG+ + +PL V + Y TL + G       +T ++D   Q      P  A +   
Sbjct: 557 HSESLALGSASFTPLQVVRGYATLTNGGYLVDPYFITKIVDESGQVQFEAKPKIACRTCN 616

Query: 634 -----GADQAISVASDFLVQHAMTQVVQSGTATKLGQ 665
                G  Q  +V SD  V++  T  + + T+    Q
Sbjct: 617 IPVIYGDTQKSAVLSDDNVENVATSTINNNTSVPTPQ 653



 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 24/155 (15%)

Query: 625 NQP-LSASQRGADQAISVASDFLVQHAMTQVVQS-----GTATKLGQAFPGVTLAGKTGT 678
           N P + A+Q+ A   IS    FL+  A+   +       GT  + G+      + GKTGT
Sbjct: 660 NSPQVDAAQQYAPHVISTPLSFLISDALNSNIFGEPGWMGTGWRAGRDLKRHDIGGKTGT 719

Query: 679 SNDSRDSWFAGFDERNVAAVWVGLDDN----GKTSLY------------GSSGAMAVYQA 722
           +N S+D+WF+G+    V +VW+G DD+    G+++              G+  A   +  
Sbjct: 720 TNSSKDAWFSGYGPDVVTSVWIGFDDHRRDLGRSTASGVIPDQISGAEGGAKSAQPAWDD 779

Query: 723 FLKQ--RAPISLRRTPVNGVVSGYFDAKTGVAKQG 755
           ++K          +TP  GVV+   D  TG    G
Sbjct: 780 YMKAVLEGVPEQPQTPPPGVVTVTIDKSTGKLSDG 814