Pairwise Alignments

Query, 789 a.a., penicillin-binding protein 1B (RefSeq) from Shewanella loihica PV-4

Subject, 758 a.a., penicillin-binding protein, 1A family from Phaeobacter inhibens DSM 17395

 Score =  242 bits (617), Expect = 6e-68
 Identities = 176/544 (32%), Positives = 261/544 (47%), Gaps = 41/544 (7%)

Query: 197 VATDKIPKAIVDALILVEDRSFYEHHGVNPFAIIRAAMVNISAGR---TVQGGSTLTQQL 253
           V ++ +   + +A++  ED+ FY H GV+P  +  A  +N+  GR   +  GGST+TQQ 
Sbjct: 165 VTSETVSPYLKNAIVATEDKRFYRHFGVSPRGVASAVRINLREGRGPLSGHGGSTITQQT 224

Query: 254 AKNFFLS---------SER---------SIIRKLREALMAIIIDFRYDKDEILEAYLNEV 295
           AK   L          SER         S+ RK +EA+ A+ ++ +Y KDEIL  Y+N  
Sbjct: 225 AKLLCLGVVFDPTEWESERAYERDCRQGSLWRKAKEAIFAMAMEAKYTKDEILSIYMNRA 284

Query: 296 YMGQDKSRAVHGMGLASQFYFGRPIAELTLPQQAFLVAAIKGPSYYNPWRFPERAQERRD 355
           Y+G       +G   A+Q YFG+   ++   + A L   +  PS   P    +R+Q+R  
Sbjct: 285 YLGG----GAYGAEAAAQRYFGKSANQVDASEAAMLAGLLTAPSTLAPTNNLQRSQDRAA 340

Query: 356 LVLRLLMESGQLPVAQYKAAVESPLGVRKASKPVHQKLPAFFAV-VRGELSRRFGDSLLQ 414
            VLRL+ E G L  ++ ++A  SP  + +A+     +   +FA  V   +   FG    +
Sbjct: 341 TVLRLMQEQGYLTTSEMRSAQNSPAVLSEAAAA---RAGGYFADWVMDTIPDFFGSETTE 397

Query: 415 QSGIKVYTTLDPLAQEAAEQAVRSTMKNLEQRDKALQVGMVVTDKYSAGIAAMVGDKVPS 474
              + + TT+D   Q AAE A+        +     Q  +VV     A + AMVG +   
Sbjct: 398 D--VVIRTTIDQRLQRAAEDALNHVFDTKVREGSKAQAAIVVMSADGA-VRAMVGGRKSR 454

Query: 475 YQG-FNRAVEIRRPIGSLIKPFVYATALTHGDKYTLATPLKDEPITLTNSQGKTWSPQNV 533
             G FNRA + +R  GS  KPFVYATAL  G  Y+    + D    L       W P+N 
Sbjct: 455 VSGVFNRATQAKRQTGSAFKPFVYATALELG--YSPLDRVLDAQYCLDVPGSGQWCPKNY 512

Query: 534 NKQFSGEVPLMTAFKKSMNVPTVNLGMAIGTDAVATTLAKSGWDETIPEYPSMLLGAVNG 593
            ++F GEV L  A + S+NVP V +  A+G D V       G D  +   P++ LGA   
Sbjct: 513 TRKFYGEVTLARALRDSLNVPAVKVSEAVGRDLVRRVAGDFGLDSELAAGPALALGASES 572

Query: 594 SPLMVAQVYQTLADNGRYRQLNAVTHV-LDADNQPLSASQRG-ADQAISVASDFLVQHAM 651
           + L +   Y  + + G       VT + L  DN P+  +  G  ++ I   +   +   M
Sbjct: 573 TLLEMTGAYAGILNGGSSVTPYGVTELTLIGDNTPMMGASGGLGERVIQTKAARELIWMM 632

Query: 652 TQVVQSGTATKLGQAFPGVTLAGKTGTSNDSRDSWFAGFDERNVAAVWVGLDDNGKTSLY 711
            QVV  G+  +     PG   AGKTGT+  +RD+WF GF    VA VW+G DDN  T L 
Sbjct: 633 EQVVSQGSGRR--AQIPGWQAAGKTGTTQAARDAWFVGFTADYVAGVWMGYDDN--TPLS 688

Query: 712 GSSG 715
           G +G
Sbjct: 689 GVTG 692