Pairwise Alignments

Query, 462 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

Subject, 462 a.a., sigma-54 dependent transcriptional regulator from Rhodanobacter denitrificans FW104-10B01

 Score =  175 bits (443), Expect = 3e-48
 Identities = 132/466 (28%), Positives = 213/466 (45%), Gaps = 23/466 (4%)

Query: 5   RNILLVDDEASWLRTLAVTLNRLVPEAEIDTCVDSRQVLNRLQVGDYALVLLDLTMPFHS 64
           + +L++DDE      L +TL R+  + ++D      +    L    Y L   D+ +P  S
Sbjct: 4   QTVLVIDDERDIRELLTITLGRM--DLQVDAVGTVAEARRALAERSYDLCFTDMRLPDGS 61

Query: 65  GEELLGMIRAEHPNTRVIIVTGVNEVDTAVRCIKHGAYDYFIKTDNVSDLAHTVRRALEV 124
           G E++ +I AEHP+  V ++T    VD AV  +K GA+D+  K  ++  L   VR AL +
Sbjct: 62  GHEVIELIAAEHPDMPVAMITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRL 121

Query: 125 VGLERNYLHIKERFLSRTLDNPKAFNNILTCEPVLLDQFRY-LEAVAFSPEPLLIHGESG 183
                     +ER            ++ L  +   + Q R  +  +A +  P+ I GESG
Sbjct: 122 A---------EERRTGAAAAKTGDSSDRLIGDSTAMQQVRATIGKLARNQAPVYIAGESG 172

Query: 184 TGKSEFARSCHQLFSPEQ-PFVSLNLAGINSDTFELKLCGRLSHKPNGEVDAVTGMLHQA 242
            GK   AR  H+       PFV +N   I S+  E +  G       G      G+   A
Sbjct: 173 VGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRKGSFTGASVDKEGLFQAA 232

Query: 243 GSGVLYLSEIGALPLSAQITLLELIESRSYSPQGSDSRFPIKCKFVVSTQDDLLTLNKAG 302
             G L+L E+  LPL  Q+ LL  I+ ++  P G     P+  + + +T  +L  L + G
Sbjct: 233 QGGTLFLDEVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLGQLVEQG 292

Query: 303 EFRSDLLYRLRAHKIRLPRLAERPLDIAMLINHFIAEAAEEMSLSAPQQPRDLAPKLLDY 362
           +FR DL YR+   ++R+P L ER  D+  L    +   A +   S  Q        L  Y
Sbjct: 293 QFRQDLFYRINVIELRVPPLRERRGDVPQLSAFILKALAGKSGDSVGQLSPSAREALEAY 352

Query: 363 DFPGNLNELKGMVFDAVSRSDGVTLNISPFMEAIKEHK-SLDAAPGDHIIFPKSLPT--- 418
           DFPGN+ EL+ ++  A++  DG T+  +  M   +  + S + A       P +  T   
Sbjct: 353 DFPGNVRELENILERAMAMCDGSTIEAADLMLPQRSARISHEPAATGQPPAPVAAATGAD 412

Query: 419 ------LAQMNQALIDEAMSRTANNQTAAAQILGISQSALSRRLTK 458
                 ++ + +  I +A+  +  N+TAAA+ LGI+  AL  +L K
Sbjct: 413 GGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKK 458