Pairwise Alignments

Query, 462 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

Subject, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas fluorescens FW300-N2C3

 Score =  177 bits (450), Expect = 5e-49
 Identities = 133/476 (27%), Positives = 229/476 (48%), Gaps = 36/476 (7%)

Query: 1   MKLARNILLVDDEASWLRTLAVTLNRLVPEAEIDTCVDSRQ-VLNRLQVGDYALVLLDLT 59
           M  +  + +VDD+ S    L   L +   E       DS   V++RL      +++ D+ 
Sbjct: 1   MSRSETVWIVDDDRSIRWVLEKALQQ---EGMTTQSFDSADGVMSRLARQQPDVIISDIR 57

Query: 60  MPFHSGEELLGMIRAEHPNTRVIIVTGVNEVDTAVRCIKHGAYDYFIKTDNVSDLAHTVR 119
           MP  SG +LL  IR +HP   VII+T  +++D+AV   + GA++Y  K  +V +    V+
Sbjct: 58  MPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVK 117

Query: 120 RALEVVGLERNYLHIKERFLSRTLDNPKAFNNILTCEPVLLDQFRYLEAVAFSPEPLLIH 179
           RA +    ++    +    L+RT +       I+   P + + FR +  ++ S   +LI+
Sbjct: 118 RANQHAQEQQGMEEVPA--LARTPE-------IIGEAPAMQEVFRAIGRLSHSNITVLIN 168

Query: 180 GESGTGKSEFARSCHQLFSPE--QPFVSLNLAGINSDTFELKLCGRLSHKPNGEVDAVTG 237
           GESGTGK   A + H+  SP    PF++LN+A I  D  E +L G       G  +   G
Sbjct: 169 GESGTGKELVAHALHR-HSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRG 227

Query: 238 MLHQAGSGVLYLSEIGALPLSAQITLLELIESRSYSPQGSDSRFPIKCKFVVSTQDDLLT 297
              QA  G L+L EIG +P   Q  LL ++    +   G  +   +  + + +T  +L T
Sbjct: 228 RFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLET 287

Query: 298 LNKAGEFRSDLLYRLRAHKIRLPRLAERPLDIAMLINHFIAEAAEEMSLSAPQQPRDLAP 357
           L  AG+FR DL +RL   +I +PRLA+R  DI  L  HF++ AA+E+++       +   
Sbjct: 288 LVHAGKFREDLFHRLNVIRIHIPRLADRREDIPTLARHFLSRAAQELAVEPKLLKSETEE 347

Query: 358 KLLDYDFPGNLNELKGMVFDAVSRSDGVTLNISP-----------------FMEAIKEHK 400
            L +  +PGN+ +L+         + G  ++IS                  + +A+++  
Sbjct: 348 YLKNLPWPGNVRQLENTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWA 407

Query: 401 SLDAAPGDHIIFPKSLPTLAQMNQALIDEAMSRTANNQTAAAQILGISQSALSRRL 456
               A G   +   ++P   ++   +I+ A+  TA  +  AA +LG  ++ L+R++
Sbjct: 408 DQALARGQSSLLDSAVPAFERI---MIETALKHTAGRRRDAAVLLGWGRNTLTRKI 460