Pairwise Alignments

Query, 462 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

Subject, 442 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25-INTG

 Score =  181 bits (458), Expect = 6e-50
 Identities = 117/421 (27%), Positives = 209/421 (49%), Gaps = 21/421 (4%)

Query: 39  SRQVLNRLQVGDYALVLLDLTMPFHSGEELLGMIRAEHPNTRVIIVTGVNEVDTAVRCIK 98
           + + L R+      +V+ D+ +P   G ELL  ++A   +  V+++TG  ++  AV  ++
Sbjct: 37  AEEALKRIGENFAGIVISDIRLPGIDGLELLTRLKALDKSLPVVLITGHGDISMAVGAMR 96

Query: 99  HGAYDYFIKTDNVSDLAHTVRRALEVVGLERNYLHIKERFLSRTLDNPKAFNNILTCEPV 158
           +GAYD+  K  +   L    RRALE  GL R    ++ +   R          I+   P 
Sbjct: 97  NGAYDFMEKPFSPERLVDVARRALEQRGLAREVWSLRRQLAERD----SLEGRIIGRSPA 152

Query: 159 LLDQFRYLEAVAFSPEPLLIHGESGTGKSEFARSCHQLFSPEQ-PFVSLNLAGINSDTFE 217
           + +    +  VA +   +LI GE+GTGK   AR  H         FV+LN  G+  + FE
Sbjct: 153 MQNLRELIANVADTSANVLIEGETGTGKELVARCLHDFSRRHSHQFVALNCGGLPENLFE 212

Query: 218 LKLCGRLSHKPNGEVDAVTGMLHQAGSGVLYLSEIGALPLSAQITLLELIESRSYSPQGS 277
            ++ G  ++   G      G +  A  G L+L E+ ++P++ QI LL +++ R+    GS
Sbjct: 213 SEIFGHEANAFTGAGKRRIGKIEHAHEGTLFLDEVESMPINLQIKLLRVLQERTLERLGS 272

Query: 278 DSRFPIKCKFVVSTQDDLLTLNKAGEFRSDLLYRLRAHKIRLPRLAERPLDIAMLINHFI 337
           +    + C+ + +T+ DL  L++A +FRSDL YRL    + LP L ER  DI  L  HF+
Sbjct: 273 NQSVAVDCRVIAATKSDLDELSRASQFRSDLYYRLNVVTLELPPLRERREDILQLFEHFL 332

Query: 338 AEAAEEMSLSAPQQPRDLAPKLLDYDFPGNLNELKGMVFDAVSRSDGVTLNISPFMEAIK 397
            +++     +AP+        L+ +D+PGN+ EL+ +       ++   L +  F     
Sbjct: 333 QQSSLRFDRTAPELDNQTLSSLMSHDWPGNVRELRNV-------AERFALGLPAF----- 380

Query: 398 EHKSLDAAPGDHIIFPKSLPTLAQMNQALIDEAMSRTANNQTAAAQILGISQSALSRRLT 457
             KS  ++    + F +++       + L+++A+ R+  N T A+Q LG++++ L  ++ 
Sbjct: 381 -KKSGASSGSQGLAFTEAVEA---FERNLLNDALQRSGGNLTQASQELGMAKTTLFDKVK 436

Query: 458 K 458
           K
Sbjct: 437 K 437