Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

Subject, 352 a.a., DNA polymerase IV from Rahnella sp. WP5

 Score =  403 bits (1036), Expect = e-117
 Identities = 217/346 (62%), Positives = 258/346 (74%), Gaps = 7/346 (2%)

Query: 1   MKKIIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASA 60
           M+KIIHVDMDCFFAAVEMRD P LR  PIA+GG  DRRGVIST NY ARKFGV SAM + 
Sbjct: 1   MRKIIHVDMDCFFAAVEMRDDPSLRDIPIAIGGSRDRRGVISTANYPARKFGVHSAMPTG 60

Query: 61  YALKLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGSAT 120
            ALKLCP L ++PGRM  YKE S  IRE+FARYT LIEPLSLDEAYLDVS  TQ  GSAT
Sbjct: 61  MALKLCPHLKVIPGRMEAYKEASNHIREIFARYTPLIEPLSLDEAYLDVSHATQCNGSAT 120

Query: 121 LIAEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIK 180
           LIA  IR+ IF+   LTASAGIAP+KFLAKIASDLNKPNGQ+VITP+ +  F++ L L K
Sbjct: 121 LIAAEIRQAIFDEINLTASAGIAPIKFLAKIASDLNKPNGQFVITPEKVGAFLQDLPLSK 180

Query: 181 IPGVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRER 240
           IPGVGKVTA +L+  GLITC DVQ      L++RFGKFG VL++R QGID R ISP R R
Sbjct: 181 IPGVGKVTAQRLQEQGLITCGDVQRYDLAKLLKRFGKFGRVLWERCQGIDEREISPERLR 240

Query: 241 KSVGVETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVVKLKFDDFKQTTI 300
           KSVGVE TLA+DI+++E+C +++ +L  EL  R+SR +   RI +Q VKLKF DF+QTT 
Sbjct: 241 KSVGVERTLAEDIHSWEECVSLIERLYPELQTRLSRVSPDLRIARQGVKLKFHDFQQTTQ 300

Query: 301 EQRSDEVSVKLFYDLLKQALE----RRAGRGIRLLGVSVGLESEAV 342
           E     ++ +   DLLK A E    RR GRG+RL+G+ V L+   +
Sbjct: 301 EHVWPVLNKE---DLLKVAREAWEQRRGGRGVRLVGLHVTLQDPQI 343