Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

Subject, 431 a.a., DNA polymerase IV from Rhodopseudomonas palustris CGA009

 Score =  195 bits (495), Expect = 2e-54
 Identities = 129/350 (36%), Positives = 186/350 (53%), Gaps = 10/350 (2%)

Query: 4   IIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASAYAL 63
           + H+D D F+A VE RD P L  KP+ VGG   +RGV+S   Y AR FGVRSAM    AL
Sbjct: 48  LAHIDCDAFYATVEKRDNPALADKPVIVGG--GKRGVVSAACYIARTFGVRSAMPMFKAL 105

Query: 64  KLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGS--ATL 121
            LCP   +V   M+ Y  V  ++R+     T L+EPLS+DEA+LD++   +  G   A +
Sbjct: 106 ALCPSATVVRPDMAKYVRVGREVRQAMRALTPLVEPLSIDEAFLDLAGTERMHGMIPAKV 165

Query: 122 IAEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIKI 181
           +A+   RE+    G+TAS G++  KFLAKIASDL+KP G   +      E +    +  I
Sbjct: 166 LAK-FAREVERDIGVTASVGLSCNKFLAKIASDLDKPRGFAALDQDEAREMLAPRPVGFI 224

Query: 182 PGVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRERK 241
            GVG  TA++L + G  T AD+Q      LM +FG  G  L+  A+GID R + P R  K
Sbjct: 225 FGVGPATASRLASRGFRTIADLQRADEIELMRQFGDEGRRLWRLARGIDDRKVVPDRGAK 284

Query: 242 SVGVETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVVKLKFDDFKQTTIE 301
           S+  ETT   DI      + ++ +L +++S R+  +A S       +KLK  DF+Q T  
Sbjct: 285 SISNETTFEDDIRDLATLEKILWRLSEKVSSRLKSAALSG--STITLKLKTADFRQRTRA 342

Query: 302 Q--RSDEVSVKLFYDLLKQALERRA-GRGIRLLGVSVGLESEAVGAGLDE 348
           Q   +        + + ++ L +   G   RL+G  V   +E  G   D+
Sbjct: 343 QTIHAPTQMANRIFSVSREMLSKEVDGTAFRLIGTGVSALTEQTGPAEDD 392