Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

Subject, 352 a.a., DNA polymerase IV from Pseudomonas fluorescens SBW25-INTG

 Score =  335 bits (858), Expect = 1e-96
 Identities = 175/336 (52%), Positives = 228/336 (67%), Gaps = 1/336 (0%)

Query: 2   KKIIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASAY 61
           +KIIHVD DCF+AA+EMRD P L  KP+AVGG +DRRGVI+TCNYEAR +GVRSAM+S +
Sbjct: 4   RKIIHVDCDCFYAAIEMRDDPSLAQKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRH 63

Query: 62  ALKLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGSATL 121
           ALKLCPDL +V  RM  YKE S +I+ +F  YT+LIEPLSLDEAYLDVSD     GSAT 
Sbjct: 64  ALKLCPDLTIVKPRMDAYKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATR 123

Query: 122 IAEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIKI 181
           IA+ IRR +     +T SAG+AP KFLAKIASD  KPNG +VITP  + +FV  L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSQLRVSKL 183

Query: 182 PGVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRERK 241
            GVGKVTA KL  +G+  C  ++  ++ +L+  FG FG  L+  A+G+D R +     R+
Sbjct: 184 HGVGKVTADKLARLGIEDCLQLREWNKLALVREFGSFGERLWSLARGVDDRVVQNDSRRQ 243

Query: 242 SVGVETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVVKLKFDDFKQTTIE 301
           S+ VE T   D+     C A +P+L++ L+GR++R   S R  K  VK+KF DF QTT+E
Sbjct: 244 SISVENTYDVDLPDLSSCLAKLPELMETLAGRMARIDSSYRAGKPFVKVKFHDFTQTTLE 303

Query: 302 QRSDEVSVKLFYDLLKQALERRAGRGIRLLGVSVGL 337
           Q      ++ +  LL QA   R G+ +RLLG+ V L
Sbjct: 304 QAGAGRDLESYQQLLTQAF-NRGGKPVRLLGIGVRL 338