Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

Subject, 366 a.a., DNA polymerase IV from Pedobacter sp. GW460-11-11-14-LB5

 Score =  268 bits (684), Expect = 2e-76
 Identities = 154/342 (45%), Positives = 220/342 (64%), Gaps = 12/342 (3%)

Query: 1   MKKIIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASA 60
           ++KIIH+DMD F+A+VE RDFPE RGKP+ VGG+ D RGV+ST +YEAR++G+RSAM+S+
Sbjct: 9   LRKIIHIDMDAFYASVEQRDFPEYRGKPLVVGGKPDSRGVVSTASYEARQYGIRSAMSSS 68

Query: 61  YALKLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGSAT 120
            A +LCP  I V  R   Y  VS  +RE+F+RYT+LIEPLSLDEAYLDV++     GSA 
Sbjct: 69  KAYQLCPTAIFVYPRFDAYTAVSKALREIFSRYTDLIEPLSLDEAYLDVTEDKLGIGSAI 128

Query: 121 LIAEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIK 180
            IA++I+  I     LTASAG++  KF+AK+ASD+NKP+G   I P  I  F++ L + K
Sbjct: 129 DIAQSIKDAIKNELNLTASAGVSINKFVAKVASDMNKPDGLTFIGPSKIKAFMEKLPVEK 188

Query: 181 IPGVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRER 240
             GVGKVT AK++ M + T AD++  +   L+ +FGK G   Y   +GID R +  HRE 
Sbjct: 189 FFGVGKVTGAKMKAMQINTGADLKKLTEAQLVAQFGKSGRFYYKIVRGIDERPVQSHRET 248

Query: 241 KSVGVETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVV--KLKFDDFKQT 298
           KSVG E T  +D  T E   +VM  L++++S  +++  +  ++  + V  K+KF DFK  
Sbjct: 249 KSVGAEDTFPED--TNE--DSVMHDLLKQISETVAKRLEKYQLSGKTVTLKIKFADFKLI 304

Query: 299 TIEQRSDEVSVK----LFYDLLKQALERRAG-RGIRLLGVSV 335
           T   RS    +     ++ + +K   E   G   +RLLG+++
Sbjct: 305 T-RSRSFAAPINKAEVIYAEAIKLLEEAALGTTQVRLLGITL 345