Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

Subject, 439 a.a., DNA polymerase IV from Pedobacter sp. GW460-11-11-14-LB5

 Score =  186 bits (473), Expect = 8e-52
 Identities = 112/339 (33%), Positives = 187/339 (55%), Gaps = 11/339 (3%)

Query: 2   KKIIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASAY 61
           ++IIH+D D FF +VE+R  P+L GKP+ +GG  DR GV+++C+YEAR++G+ SAM    
Sbjct: 5   RQIIHMDQDAFFVSVEIRKNPKLSGKPVIIGGGGDR-GVVASCSYEARQYGIHSAMPGRT 63

Query: 62  ALKLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGSATL 121
           A  LCP  I + G M  Y + S +I EV A    L E  S+DE Y+D++   +  G    
Sbjct: 64  AKLLCPQAIFLKGDMEEYSKASHEITEVIADKVPLFEKASIDEHYIDMTGMDRFFGCMKF 123

Query: 122 IAEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIKI 181
            +E +R+ I    GL  S G++  K +AKIA++ +KP+G+  +T   +  F+  LA+ KI
Sbjct: 124 ASE-LRQTIIREMGLPISFGLSINKTVAKIATNESKPSGEMQVTFPQLRPFLDPLAIHKI 182

Query: 182 PGVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRERK 241
           PG+G  T  KL  MG+     +    +Q + +  G+ G  L+ +A GID   + P+RERK
Sbjct: 183 PGIGHATYKKLSEMGVREILTLTQIPQQLMFKILGQHGLSLWQKANGIDLSPVVPYRERK 242

Query: 242 SVGVETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVVKLKFDDFKQTTIE 301
           S+G + T   D     + +A++  ++  L+ ++    K        V +++ +F+  T +
Sbjct: 243 SIGTQATFESDTMDMAKLKAIITGMVTGLTFQLRNQKKLTAC--ITVTVRYTNFETVTQQ 300

Query: 302 QRSDEVSVKLF-----YDLLKQALERRAGRGIRLLGVSV 335
           +R    S+  F     + L ++   +R    +RL+GV +
Sbjct: 301 ERIPYTSLDSFLISKAHSLFEKVYAKR--MLLRLVGVKL 337