Pairwise Alignments

Query, 457 a.a., DNA repair protein RadA (RefSeq) from Shewanella loihica PV-4

Subject, 453 a.a., DNA repair protein RadA from Pseudomonas stutzeri RCH2

 Score =  335 bits (860), Expect = 1e-96
 Identities = 188/458 (41%), Positives = 271/458 (59%), Gaps = 9/458 (1%)

Query: 1   MAKNKTAYVCSECGQDFPRWQGQCNACGEWNTISEVRLAPAKSSAGSVAGYAGAVGGGSK 60
           MAK K  Y C+ECG  FP+W GQC  CG WNT+ E  +  A   +G  AG+AG      +
Sbjct: 1   MAKAKRMYGCTECGSTFPKWAGQCGDCGAWNTLVETVIEGAAPPSGR-AGWAGEQAN-IR 58

Query: 61  KLSEVEEFEAKKLLTGIGELDRVLCGGLTTGSVNIISGDPGAGKTTILSDLVSRMSQLMP 120
            L+EV   E  +  T  GELDRVL GGL  GSV +I GDPG GK+TIL   +  ++Q  P
Sbjct: 59  TLAEVSVEEVPRFSTASGELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIAQHYP 118

Query: 121 SLYCTAEESLSQFKNRVNRLRLDCNEENLYLMAETNVEAIIAELEAKQVKFAVIDSIQAV 180
           +LY T EES  Q   R  RL  D  ++ L +M ET +E+IIA    ++ K  VIDSIQ +
Sbjct: 119 ALYVTGEESQQQVAMRARRL--DLPQDKLKVMTETCIESIIATARLEKPKVMVIDSIQTI 176

Query: 181 VTDLANGSPGSPSQVKGSAQALTQYCKQNNVTMFLVAHVNKNNETAGPQTLIHIVDCLTH 240
            T+    +PG  +QV+ SA  L ++ KQ+   +FLV HV K    AGP+ L H+VD + +
Sbjct: 177 FTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLY 236

Query: 241 LEC-NDGQVRTLRANKNRFGDVDTVGIFRMTERGMLSVDNPSEIFLSGSTTESPGAAITC 299
            E  +DG++R LRA KNRFG ++ +G+F MT++G+  V NPS IFL+ +    PG+ +  
Sbjct: 237 FEGESDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVTNPSAIFLTRAQEAVPGSVVMA 296

Query: 300 IRKGNRNLLLEIQCLTTEAEGEFPQRVCVGLNMNRIKMLTGILRKHTRTKIY-HDTYFNL 358
             +G R +L+E+Q L   +    P+RV +GL+ NR+ ML  +L +H     Y  D + N+
Sbjct: 297 TWEGTRPMLVEVQALVDTSHLANPRRVTLGLDQNRLAMLLAVLHRHGSIPTYDQDVFINV 356

Query: 359 VGGLKIDESETCIDLALVAALLSSLNEFVVPRTTCIMGELSLNGDVRPIDSGVPRVKEAV 418
           VGG+K+   ET  DLAL+AA++SSL    +     + GE+ L+G++RP+ SG  R+KEA 
Sbjct: 357 VGGVKV--LETAADLALMAAVISSLRNRPLDTDLLVFGEVGLSGEIRPVPSGQERLKEAA 414

Query: 419 QHGFTEIFIPFRNYHKSMEGLGAKINPIKTIHELLELI 456
           +HGF    +P  N  K     G +I  +  + + L+ +
Sbjct: 415 KHGFKRAIVPKGNAPKEAPA-GLQIIAVTRLEQALDAL 451