Pairwise Alignments

Query, 457 a.a., DNA repair protein RadA (RefSeq) from Shewanella loihica PV-4

Subject, 478 a.a., DNA repair protein RadA from Synechococcus elongatus PCC 7942

 Score =  268 bits (685), Expect = 3e-76
 Identities = 158/444 (35%), Positives = 241/444 (54%), Gaps = 18/444 (4%)

Query: 1   MAKNKTAYVCSECGQDFPRWQGQCNACGEWNTISEVRLAP-AKSSAGSVA---------G 50
           MA++++ YVC  CG   PR+ G+C AC  WN++ E  +AP AK++  +V           
Sbjct: 1   MARSRSEYVCQNCGHRAPRYVGRCPACESWNSLVEEAIAPTAKTAIATVLPSRQRRDRLA 60

Query: 51  YAGAVGGGSKKLSEVEEFEAKKLLTGIGELDRVLCGGLTTGSVNIISGDPGAGKTTILSD 110
            A      ++ LS + +   +++ +G GE DRVL GGL  GS+ +I GDPG GK+T+L  
Sbjct: 61  EAPPQAVAAQPLSAIADVSQQRIASGSGEFDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQ 120

Query: 111 LVSRMSQLMPSLYCTAEESLSQFKNRVNRLRLDCN----EENLYLMAETNVEAIIAELEA 166
             + +SQ  P LY  AEES  Q K R  R+    +    ++  YL+ E +++AI+AELE 
Sbjct: 121 TATALSQQQPILYVCAEESGQQVKLRWQRIAAHRSPNQADQQFYLLPEIDLDAIVAELET 180

Query: 167 KQVKFAVIDSIQAVVTDLANGSPGSPSQVKGSAQALTQYCKQNNVTMFLVAHVNKNNETA 226
            +   A+IDSIQA+ +     +PGS +QV+    AL +  KQ  +T+ +V HV K+   A
Sbjct: 181 LRPPVAIIDSIQALYSPALGSAPGSVAQVRECTAALMRVAKQLTITLLIVGHVTKDGAIA 240

Query: 227 GPQTLIHIVDCLTHLECND-GQVRTLRANKNRFGDVDTVGIFRMTERGMLSVDNPSEIFL 285
           GP+ L H+VD + + E +     R LR+ KNRFG    +GIF M +RG+  V NPS +FL
Sbjct: 241 GPKVLEHLVDTVLYFEGDRFASHRLLRSVKNRFGASQELGIFEMVDRGLEEVGNPSALFL 300

Query: 286 SGSTTESPGAAITCIRKGNRNLLLEIQCLTTEAEGEFPQRVCVGLNMNRIKMLTGILRKH 345
                 + G A     +G R LL+E+Q L + +    P+R   G+  NR+  +  +L K 
Sbjct: 301 GSRDQATSGTATIVACEGTRPLLVELQALVSPSSYSSPRRAGTGIEYNRLLQILAVLEKR 360

Query: 346 TRTKI-YHDTYFNLVGGLKIDESETCIDLALVAALLSSLNEFVVPRTTCIMGELSLNGDV 404
               +   D Y    GGL +  +E   DL +  AL++S  +  +   T ++GE+ L G V
Sbjct: 361 LGLPLSKFDAYVASAGGLNV--AEPAADLGIAIALVASFRDRCLRPDTVLIGEIGLGGQV 418

Query: 405 RPIDSGVPRVKEAVQHGFTEIFIP 428
           RP+     R+KEA + GF    +P
Sbjct: 419 RPVSQVELRLKEAAKLGFQRALLP 442