Pairwise Alignments

Query, 457 a.a., DNA repair protein RadA (RefSeq) from Shewanella loihica PV-4

Subject, 461 a.a., DNA repair protein RadA from Rhodanobacter denitrificans MT42

 Score =  354 bits (908), Expect = e-102
 Identities = 194/442 (43%), Positives = 272/442 (61%), Gaps = 12/442 (2%)

Query: 1   MAKNKTAYVCSECGQDFPRWQGQCNACGEWNTISEVRLAPAKSSAGSV----AGYAGAVG 56
           MAK KTAYVC++CG + P+WQG C  CG WNT+SE+ LAPA ++  SV    + YAGA  
Sbjct: 1   MAKAKTAYVCTDCGAEHPKWQGSCAECGAWNTLSEIVLAPASAAKPSVGAQRSSYAGAAA 60

Query: 57  GGSK--KLSEVEEFEAKKLLTGIGELDRVLCGGLTTGSVNIISGDPGAGKTTILSDLVSR 114
           G  +   L+ V      + LTGIGELDRVL GGL  GSV +I GDPG GK+T+L  ++  
Sbjct: 61  GAPRITPLTAVALTTEARTLTGIGELDRVLGGGLVEGSVVLIGGDPGIGKSTLLLQMLGT 120

Query: 115 MSQLMPSLYCTAEESLSQFKNRVNRLRLDCNEENLYLMAETNVEAIIAELEAKQVKFAVI 174
           +   + S+Y T EESL+Q   R  RL L    E L  +AET +E I+ +  A + +  VI
Sbjct: 121 LGAHLSSVYVTGEESLAQVAARAQRLGLPL--EPLQALAETCIERILEQAAAMRPRVLVI 178

Query: 175 DSIQAVVTDLANGSPGSPSQVKGSAQALTQYCKQNNVTMFLVAHVNKNNETAGPQTLIHI 234
           DSIQ + T+L   +PGS SQV+ SA  LT+Y K+   ++FLV HV K    AGP+ L H+
Sbjct: 179 DSIQTIWTELLTAAPGSVSQVRESAAKLTRYAKETGTSVFLVGHVTKEGGIAGPRVLEHM 238

Query: 235 VDCLTHLECNDG-QVRTLRANKNRFGDVDTVGIFRMTERGMLSVDNPSEIFLSGSTTESP 293
           VD + + E   G + R LRA KNRFG V+ +G+F M+++G+  V NPS IFLS     + 
Sbjct: 239 VDAVLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMSDKGLREVPNPSAIFLSAHAGPTS 298

Query: 294 GAAITCIRKGNRNLLLEIQCLTTEAEGEFPQRVCVGLNMNRIKMLTGILRKHTRTKIY-H 352
           G+A+   R+G R LL+E+Q L  ++    P+RV +GL  NR+ ML  +L +H     Y  
Sbjct: 299 GSAVMVTREGTRPLLVEVQALVDQSSLGNPRRVTLGLEQNRLAMLLAVLHRHGGVAAYDQ 358

Query: 353 DTYFNLVGGLKIDESETCIDLALVAALLSSLNEFVVPRTTCIMGELSLNGDVRPIDSGVP 412
           D + N+VGG+++   ET  DL ++ A+LSSL +  +P  T   GE+ L+G++RP+ +G  
Sbjct: 359 DVFVNVVGGIRV--QETAADLPVLLAVLSSLRDRPLPEHTIAFGEVGLSGEIRPVPNGEE 416

Query: 413 RVKEAVQHGFTEIFIPFRNYHK 434
           R+KEA  HGF    +P  N  K
Sbjct: 417 RLKEAAHHGFRRAIVPKANAPK 438