Pairwise Alignments

Query, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  342 bits (877), Expect = 1e-98
 Identities = 188/379 (49%), Positives = 250/379 (65%), Gaps = 1/379 (0%)

Query: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60
           M F+ L L  PL + LE L + + T +Q EAIP VL G DLMA+AQTGTGKTA FALP+L
Sbjct: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  AKLMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQ 120
            +L  +  A+ +    RALVLVPTRELA QVH+    + +   L    VYGGVSI  Q  
Sbjct: 61  QRLT-MEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMM 119

Query: 121 QLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSE 180
            L  G+D++VATPGRLLDL+R+ A   + +  LV DEADRMLD+GFADE+ +L + LP +
Sbjct: 120 ALRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKK 179

Query: 181 RQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHLI 240
           RQTLLFSAT  + +  ++   L+ P  + VSP+N+A++ V+Q +  VD +RK  L  HL+
Sbjct: 180 RQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLL 239

Query: 241 NKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLV 300
            +  W +VLVF + +   D+L   L   GI + A HGD  Q +R + L  F+ GE++VLV
Sbjct: 240 AEKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLV 299

Query: 301 ATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEEI 360
           ATDVAARG+DI  L  VVN++LP VA+DYVHRIGRTGRAG  G AV+L   ++   L  I
Sbjct: 300 ATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAI 359

Query: 361 EALLDKRLPQQWLPGFEPD 379
           E L+++ LP+    GF PD
Sbjct: 360 ETLINQVLPRHDELGFVPD 378