Pairwise Alignments

Query, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 462 a.a., ATP-dependent RNA helicase RhlE from Xanthomonas campestris pv. campestris strain 8004

 Score =  337 bits (865), Expect = 3e-97
 Identities = 183/409 (44%), Positives = 256/409 (62%), Gaps = 7/409 (1%)

Query: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60
           M F  L L   L +AL    +   T IQ +AIPLVL+G DL+A AQTGTGKTAAF LP+L
Sbjct: 1   MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL 60

Query: 61  AKLMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQ 120
             L    Q     ++PRAL+L PTRELA QVH  +  ++++  + + ++YGGV +  Q  
Sbjct: 61  QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120

Query: 121 QLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLP-S 179
            L  GVDL++A PGRL+D   R +  L G+  L+ DEADRMLDMGF   I  ++  LP  
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ 180

Query: 180 ERQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHL 239
           +RQTLLFSAT ++ +  L+  +++ P +I V+P N+ ++ +  RV+ VD  RK  LL HL
Sbjct: 181 DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL 240

Query: 240 INKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVL 299
           + +   ++ LVF+R K  +DKLA  L + GI   A HG+  QG R + L+DF+ G + VL
Sbjct: 241 LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL 300

Query: 300 VATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEE 359
           VATD+AARGIDI+ L  V+NY+LP VA+DYVHRIGRTGR G  G A++L  +++A LL +
Sbjct: 301 VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ 360

Query: 360 IEALLDKRLPQQWLPGFEPDLTKADPNPRRNGKAAQKRRAKRRGQGGRR 408
           I  +L + +  + +PG+EP        P R G +A  R  +  G    R
Sbjct: 361 IVRMLGRDVEIRDVPGYEPQ------TPIRWGNSAPGRAEQPGGDRAPR 403