Pairwise Alignments

Query, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 409 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  479 bits (1234), Expect = e-140
 Identities = 241/408 (59%), Positives = 306/408 (75%)

Query: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60
           M FS LSL   L   L  L + + T IQ EAIP +L+  D+MA AQTGTGKTAAFALPIL
Sbjct: 1   MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  AKLMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQ 120
             LM   Q++ + K  RALVLVPTRELALQV Q    +A+ T +  G+ YGGVSIEAQ  
Sbjct: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 121 QLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSE 180
              AG+D+++ATPGRLLD  R+GA  L+ +  LVFDEADRMLDMGF DEI  ++  +P++
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query: 181 RQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHLI 240
           RQTLLFSATLDD + + S   L+ PKRI V+  N+ +  +EQRVYA+DS+RK   +SHL+
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240

Query: 241 NKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLV 300
              +WQ+VL+FSR K   DKL A+L + G+  ++FHGDL QGARE+VL +F++G ++VLV
Sbjct: 241 RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300

Query: 301 ATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEEI 360
           ATDVAARG+DI  L YV+N+ELP++A+DY+HRIGRTGRAG  G+A+TL+ +EDALLLEE+
Sbjct: 301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query: 361 EALLDKRLPQQWLPGFEPDLTKADPNPRRNGKAAQKRRAKRRGQGGRR 408
           E LLDKRLPQQW PGFEPD  K  P PRRN KAAQK+RAK+R  GG++
Sbjct: 361 ETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKAAQKQRAKKRALGGKK 408