Pairwise Alignments

Query, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 374 a.a., putative ATP-dependent RNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  328 bits (841), Expect = 2e-94
 Identities = 166/368 (45%), Positives = 249/368 (67%), Gaps = 1/368 (0%)

Query: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60
           M F +L++  P+ +A+E   ++  T IQ +AIP+ L+  D++  AQTGTGKTA+FA+PI+
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60

Query: 61  AKLMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQ 120
             L  L + EG   + +AL+L PTRELALQ+ + I D++++T +  G+++GGV+   Q  
Sbjct: 61  QHLH-LNKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVD 119

Query: 121 QLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSE 180
            L  G+D++VATPGRLLDL  +G  +LD +   V DEADRMLDMGF  +I  ++  LP E
Sbjct: 120 MLHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179

Query: 181 RQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHLI 240
           +QTL FSAT+ D ++AL++  LK P +I V+P++S    ++Q VY V+ + K  LL  ++
Sbjct: 180 KQTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISIL 239

Query: 241 NKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLV 300
            K + + VL+FSR K  ADK+   L + GI ++A HG+  Q AR+  L +F+ G+ +V+V
Sbjct: 240 QKSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 301 ATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEEI 360
           ATD+A+RGIDI  L  V+NY+LP V + YVHRIGRTGRAG  G+A+T   +E+   + +I
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQINDI 359

Query: 361 EALLDKRL 368
           + L  K+L
Sbjct: 360 QKLTGKKL 367