Pairwise Alignments
Query, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4
Subject, 1247 a.a., diguanylate cyclase from Pseudomonas fluorescens FW300-N2C3
Score = 442 bits (1136), Expect = e-128
Identities = 277/791 (35%), Positives = 429/791 (54%), Gaps = 33/791 (4%)
Query: 227 IKVNPRLCKMLKYSETELLNRTWTELTYFEDLKADMTQFQRMLKGEIDAYEMDKRFVAKD 286
++VN + + S E++ TEL + + QR+ G I EM F +
Sbjct: 461 LEVNKAFEEQIGLSAAEVVGHNATELNIWGIQGVGPSLLQRLQAGSIRNLEMP--FRRSN 518
Query: 287 GEIVYTHLTVACRRNHNMVDMVIAGLIDITEHKRADMAMRTSQERLALVLESSDLGMWDW 346
G+ V+T L A + + ++ + DI++ K ++TS+E+ A +S G+
Sbjct: 519 GQ-VFTGLISAEPFDLDTTPALVVVVRDISQLKETQQQLQTSEEKFAKAFHASPDGL--- 574
Query: 347 DIKSNET-----KRNPWCAKVLGCD----LERLNRDSRIWIDAIHPQDRMAVLNSIDRHL 397
+ S ++ + N +++ G + ++R D IW++ ++ + +M L D +
Sbjct: 575 -LLSRQSDGLLIEVNEGFSRITGFNSALSVDRSTLDLGIWVN-LNERKQMLDLLQRDGFV 632
Query: 398 KG---ETQKHYIEYRLISLSGEEHWILDTGKVVSRDRNGLPTRMCGVHSDITEQKKVQES 454
K +++ + RL +S I G M + DITE+ +QE
Sbjct: 633 KDFSCHIRRNDGQIRLCEVSSRPLPI------------GNEDCMLTIARDITERHLMQEK 680
Query: 455 LELAASVYNNSSEAMSVQDHKGHIITINAAFTAITGYSQEEALTQNIRILQSSRTPRSQY 514
L+ AA+V+ +++E + + D + HI +N AFT ITGYS+ EAL R+L S + Y
Sbjct: 681 LQQAATVFESTAEGVLITDTQQHISAVNRAFTEITGYSETEALGHTPRLLASGLHDSAFY 740
Query: 515 DEMNSAIRDTGYWQGELWIKNKSGEEYMVWLTINTIFDQHGQVYRRVALFSDITEKKEAE 574
M + G+WQGE+ + K+GE Y WLTI+ + ++ Q+ VA+F+DI+ K A+
Sbjct: 741 AAMWHQLTAEGHWQGEISNRRKNGELYPSWLTISAVRNRGRQITHFVAVFADISSLKHAQ 800
Query: 575 HIIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRNHSHFALMFLDLDFFKEVNDTLGHDM 634
+ QA++DPLTGLPNR + L + N A++FLDLD FK +ND+LGH +
Sbjct: 801 ARLDYQAHHDPLTGLPNRTLFESRLLAALNGQQENGGQGAVLFLDLDRFKHINDSLGHPV 860
Query: 635 GDLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSGIDSPSGVERVAQSILERIAEPYSL 694
GDLLL+ A RL+ +R+ D VARLGGDEF ++L G+ PS E +AQ +L P+
Sbjct: 861 GDLLLKGIAVRLREQLRDIDTVARLGGDEFIILLPGLQQPSDAEHIAQKLLNCFTAPFQA 920
Query: 695 GDETAYISASIGITIYPDDATSIEGLLKHADQAMYAAKEQGRNRFHYFTPSMQEYARYRM 754
G+ +ISASIG ++YP D + L+K+AD AMY +K +GRNR +T + A R+
Sbjct: 921 GEHEFFISASIGTSLYPQDGCDVATLVKNADAAMYRSKAKGRNRVESYTRDLTAQASERV 980
Query: 755 ALIKDLRNAINRKEFELFYQPIVDMNKLGVYKAEALIRWVHPQRGLVSPGEFIPVAEETG 814
AL +LR AI R E L +QP + + + AEALIRW HP G V P FIP+AEE G
Sbjct: 981 ALEHELRRAIERNELSLSFQPKISLADNRLVGAEALIRWYHPTFGDVPPEHFIPLAEENG 1040
Query: 815 LINEIGNWVFEKAAQQSARWRTQHGVEIQISINKSPIQFRDEGDTFSDWLALLRHLELSS 874
+I +IG+WV E+A +Q W + + +S+N + Q R + + LLR +L
Sbjct: 1041 MILQIGDWVLERACRQLCEWNSTYESLGSLSVNLAGAQLR-QPNLLGRIEQLLREHQLRP 1099
Query: 875 NAICVEITEGLLLDASMGVTDKLLAYRDAGIQVSLDDFGTGYSSLAYLKKFDIDYLKIDQ 934
+ + +EITE ++ + L ++ G+Q+++DDFGTGYSSL+YLK+ +D LKIDQ
Sbjct: 1100 DLLQLEITENFIMSQAEEALTVLHQLKNLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDQ 1159
Query: 935 SFTRNLESDSDGVALCEAIIVMAHKLGIKVIAEGVETQFQHDILASAGCDFAQGYLYSKP 994
SF R L D A+ AII + + +IAEGVET Q LA GC+ QGY+ S P
Sbjct: 1160 SFVRGLPDDPHDAAIVRAIIALGRSMQFTIIAEGVETLAQQQFLAEEGCEQIQGYIVSLP 1219
Query: 995 VSLPEFERLYV 1005
+ EF ++
Sbjct: 1220 LCADEFAATFL 1230
Score = 49.7 bits (117), Expect = 1e-09
Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 11/193 (5%)
Query: 314 DITEHKRADMAMRTSQERLALVLESSDLGMWDWDIKS-NETKRNPWCAKVLGCDLERLNR 372
+I + +R+S+ ++ES W+ + + +P +LG L
Sbjct: 295 EIARRVELEQELRSSEYHYRGLVESLSAIAWEARVSDFTYSYVSPHAEDLLGYPLSHWLV 354
Query: 373 DSRIWIDAIHPQDRMAVLNSIDRHLKGETQKHYIEYRLISLSGEEHWILDTGKVVSRDRN 432
W + IHP D + D + + H I+YR+I+ G W+ D +VS +
Sbjct: 355 PG-FWRNIIHPADLIRAQTYCDHEVLAG-RDHCIDYRVITADGRCLWVRD---IVSLIEH 409
Query: 433 GLPTRMCGVHSDITEQKKVQESLELA----ASVYNNSSEAMSV-QDHKGHIITINAAFTA 487
G M G+ DI+E K+ +E+L L+ ASV+ + + + + G ++ +N AF
Sbjct: 410 GHEPLMRGLMIDISEAKRTEEALRLSEQKFASVFRQCPDILVIARLLDGCLLEVNKAFEE 469
Query: 488 ITGYSQEEALTQN 500
G S E + N
Sbjct: 470 QIGLSAAEVVGHN 482
Score = 37.7 bits (86), Expect = 5e-06
Identities = 77/351 (21%), Positives = 153/351 (43%), Gaps = 41/351 (11%)
Query: 164 LVQIALPVMLIFPIVTALLGMMLARRLEVERDAKIQLQDDFIFRSQFNVGNMGIAITSV- 222
L+ LP +L+ + A++ + + RRL E +++L+ + + S+++ + +++++
Sbjct: 267 LLFYGLPALLLLVGILAVV-IRINRRLSSEIARRVELEQE-LRSSEYHYRGLVESLSAIA 324
Query: 223 ------DQHWIKVNPRLCKMLKYSETE-LLNRTWTELTYFEDLKADMTQFQRMLKGEIDA 275
D + V+P +L Y + L+ W + + DL T + D
Sbjct: 325 WEARVSDFTYSYVSPHAEDLLGYPLSHWLVPGFWRNIIHPADLIRAQTYCDHEVLAGRD- 383
Query: 276 YEMDKRFVAKDGEIVYTHLTVACRRNHNMVDMVIAGLIDITEHKRADMAMRTSQERLALV 335
+ +D R + DG ++ V+ H ++ +IDI+E KR + A+R S+++ A V
Sbjct: 384 HCIDYRVITADGRCLWVRDIVSLIE-HGHEPLMRGLMIDISEAKRTEEALRLSEQKFASV 442
Query: 336 L-ESSDL--------GMWDWDIKSNETKRNPWCAKVLGCDLERLNRDSRIW-IDAIHPQD 385
+ D+ G K+ E + A+V+G + LN IW I + P
Sbjct: 443 FRQCPDILVIARLLDGCLLEVNKAFEEQIGLSAAEVVGHNATELN----IWGIQGVGPSL 498
Query: 386 RMAVLNSIDRHLKGETQKHYIEYRLISLSGEEHWILDTGK---VVSRDRNGLPTRMCGVH 442
+ R+L+ ++ + L E + LDT VV RD + L
Sbjct: 499 LQRLQAGSIRNLEMPFRRSNGQV-FTGLISAEPFDLDTTPALVVVVRDISQLK------- 550
Query: 443 SDITEQKKVQESLELAASVYNNSSEAMSV-QDHKGHIITINAAFTAITGYS 492
Q+++Q S E A ++ S + + + + G +I +N F+ ITG++
Sbjct: 551 ---ETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLIEVNEGFSRITGFN 598
Score = 31.6 bits (70), Expect = 4e-04
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 216 GIAITSVDQHWIKVNPRLCKMLKYSETELLNRTWTELTYFEDLKADMTQFQRMLKGEIDA 275
G+ IT QH VN ++ YSETE L T L A L E
Sbjct: 694 GVLITDTQQHISAVNRAFTEITGYSETEALGHTPRLLASGLHDSAFYAAMWHQLTAE-GH 752
Query: 276 YEMDKRFVAKDGEIVYTHLTVACRRNH-NMVDMVIAGLIDITEHKRA 321
++ + K+GE+ + LT++ RN + +A DI+ K A
Sbjct: 753 WQGEISNRRKNGELYPSWLTISAVRNRGRQITHFVAVFADISSLKHA 799